Ccec029544.1
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- L_1
- Assembly
- GCA_001625245.1
- Location
- LUGF01051310.1:294871-320138[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.5e-06 0.00017 22.9 1.7 1 23 82 104 82 104 0.99 2 17 0.62 72 5.2 5.8 1 23 110 132 110 132 0.97 3 17 8.4e-06 0.00097 20.5 4.1 1 23 138 160 138 160 0.99 4 17 2.6e-05 0.003 19.0 0.1 1 23 166 188 166 188 0.98 5 17 1.9e-05 0.0022 19.4 0.1 2 23 202 224 201 224 0.95 6 17 5.9 6.9e+02 2.1 0.1 9 23 254 269 250 269 0.93 7 17 0.3 35 6.2 0.0 3 23 325 345 324 345 0.97 8 17 0.14 16 7.3 0.0 2 23 359 380 358 380 0.91 9 17 0.00019 0.022 16.3 1.0 1 23 388 411 388 411 0.94 10 17 0.016 1.8 10.2 0.2 1 23 416 439 416 439 0.94 11 17 0.0021 0.25 12.9 0.4 1 23 498 522 498 523 0.96 12 17 0.0002 0.023 16.2 0.1 2 23 574 595 573 595 0.96 13 17 0.057 6.7 8.4 0.0 1 23 603 625 603 625 0.97 14 17 1.4 1.6e+02 4.1 0.4 3 23 634 654 632 655 0.93 15 17 0.86 1e+02 4.7 0.3 1 23 731 753 731 753 0.94 16 17 0.0053 0.62 11.7 0.1 1 20 761 780 761 783 0.95 17 17 0.15 17 7.1 0.3 1 23 790 812 790 812 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTTAAAGGAAACAGCAGCAGGCTAGAGCACCTCATCGAGAAGATACAGGCCAACAAGGAGAACGTAAACGACGTGACGTCAGAGGATATCAAAGAAGCGCTGGGCAGCGTGGGCAGCGCGGCGGGCAGCTCGTGGCCGTCGTCGACGCCGGAGCCGTCGCCCTCCTCCACCCCCTCGGCCGACGTGGACGACGAGCCGCCCTTCACGCTCGGCGCCACCGAGCACACGCCCTACCAGTGCCAGTTCTGCGACAAGGCCTTCCCGCGCCTCTCCTACCTCAAGAAACATGAACAGACCCACTCGGACCAGATGCCGTTCCGCTGCGAGTTCTGCTCCCGCCTGTTCAAGCACAAGCGCTCCCGCGACCGACACGTCAAGCTGCACACCGGAGACAGGAAGTACCGCTGCGCGCATTGTGAATCTGCTTTCTCTAGGAGTGACCATCTCAAGATCCACATGAAAACTCACGACAACCAGAAACCGTTCCAGTGTACCGTGTGCAACCGCGGCTACAACACGGCGGCGGCGCTGACGTCACACATGCAGGGACACAAGCGCGACAGGGGGGAGGGGGACAGGCGGCGCGCACTGAGGTGCCTACGGTGCGGGGAAGCGTTCAAGAGACCAGACATGCTGCAGGCGCACATGACCAGTGCTCATAGCGTAGAGACATCGATGACTCCCCCTCGCCGAGTGGCATCACAGCCGCCCCCGACTCTGCTCGCCTGCATATACTGCACTCGCGACACATTCACCAGCATGGAACAGCTACAGTTGCACGTGCGAGCCGCCCATTCCGCCATCTTGAACGGCGAAGCACCAGCCCAGTATACAGTGGACCAACCGGCGCCTACAGACCTGAGCCGACGAGGTTCCGACGAAGCGCCAATTACCAAACGCCCGCGATCGAGCACCGGCTCGGTGACGCCGAAGACCACGCTTTCCCCAAGTACCCTGCTCTGCAATCAATGCGACGCGGCTTTACCGGATTTCGAAGCGTTCCGTGCTCATTTAAAGGGACATCTCGAAGAAGGGGGAGAATTGAACCGCACAAGTCCAACTCCTTGCCTACACTGTGGCGCAACTTTTGCTGATGCGGCCGCTTCTGAGAGACATCTAGCTGCTCATTATTTGGCTGTGTCCTGTGAATACAACTGTCACAGTTGCGCACGAAGTTTCCCGACGTCTGAAGATCTGCAGAAACACCTACTGGAAATGCACACCCATCATATGTATCGGTGCTCTctttgtaaagaaatatttgattcAAAAGTAACTATACAGGCACACTTTGCGATGGCACATGGTGGCGAGAACAAGGTGTGGGTGTGCCGGTCGTGCGGTGCCGCGGGCGGCGCGCTGCGGACGGAGGCGGAGGGCGCGGCGCACGTGCGCGCCCGCCACGCGTCGCGGTGCGCCTGTGGCGCTGTGCTGCCAGGCGCGCGCGCGCTGCGGGCGCACGCTGCGGCGCACCACGCCTACCGCTGTCCAGTACCCACGTGTACAGACACATTCGCCGTGCAGTACCTATTGGAGCGCCATATGCAGGCACATCATGTTACGCACCCGGGTGTGAATGGTGAAGTGAGGGTAAAGCGAGGTGAAAACAACAACGGGATAGAAGAAGACTGTCCCCCGTGCATCACAACAGAAGGAAACGGCGTGGCTACTGAAGAGCGGCGACGTAAGAACGGCGCCGTGGCGCTCCAGTGCGCCTACTGCGGTGAGCGCACGCGCAGCCGCGCCGAGCTCGAGGCACACACGCGAGCGCACTCGGGCGCCGCCGCGACCAGACACAAGTGCCTCATTTGCGATGAAGTGCTGCCCTCCGCCGCAGTGCTGGCGGAACATAAATTGACGCACTGCAAGGTGATCGCTGGAGACATATGCGCGCGGTGCCGCCAGCGGCTGCCCTCCGAGGAGGCGTTCCTGAGCCACATGGCGCGCCACCACCCGGCGCTGCCGGCGCCCTGCGTCGTCTGTCGCCAGACGCTCGCGTCCGAGGGCGAAGCCCGACTACACGCGAGGTTTCACCTGCGACCGAGCGAGGACGAGCAGCGGTGCGCGATATGTTTACGAGCATTGTCGGACAGCGAAGCGGGTGACGGTGCTCGGGCGTGCTCGGCGTGCTCGTCGTGCTACGCACGGCACGCCGCCCCCCGCCCCCCGCCGCCCGACCACGACTGCCGGCTGTGCCGTCGCGCGCTCGGCTCGCCCACGCGGCTGCAGGCGCACCTCATAGAGCACACGTTCGCCGGCATCGGCGCGTTCACCTGCTACCTGTGCTCCGCCATGTTCACGAGCGCCGCCGGCCTGCAGCGACATCTGCCGGAACATGCCACAGCTCCAAGACCGTACGACTGCGCCCGCTGCGGGTTGAAGTTCTTCTTCCGCGCCGAACTCGACAACCACGCGTTCGTACATTTGGAAGAAGCCGAGATAGCGCAAAGAGCGTTTTACGAGGCTTACGCTAGAGGTGCTGCGTCGGCTTGGGCGGCCTTGCAGCCCCCGGAAACAGCGCAACCTTCAGTGACGTCACCTTCTCAGCCGGAAGTACCGGTGAAACAGGAACCGGAGATAAAAGAGGAACGTCTGGATGAGTATATAGAGGTCGCGTCGCCGCCTCCTCCAGTGGAAACGCCGCCGAGTCCAGCCCCAGTAGTTAAACAGGAGAAGCCTGATGATGAGTAA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENVNDVTSEDIKEALGSVGSAAGSSWPSSTPEPSPSSTPSADVDDEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRGEGDRRRALRCLRCGEAFKRPDMLQAHMTSAHSVETSMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSAILNGEAPAQYTVDQPAPTDLSRRGSDEAPITKRPRSSTGSVTPKTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELNRTSPTPCLHCGATFADAAASERHLAAHYLAVSCEYNCHSCARSFPTSEDLQKHLLEMHTHHMYRCSLCKEIFDSKVTIQAHFAMAHGGENKVWVCRSCGAAGGALRTEAEGAAHVRARHASRCACGAVLPGARALRAHAAAHHAYRCPVPTCTDTFAVQYLLERHMQAHHVTHPGVNGEVRVKRGENNNGIEEDCPPCITTEGNGVATEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAATRHKCLICDEVLPSAAVLAEHKLTHCKVIAGDICARCRQRLPSEEAFLSHMARHHPALPAPCVVCRQTLASEGEARLHARFHLRPSEDEQRCAICLRALSDSEAGDGARACSACSSCYARHAAPRPPPPDHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHATAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALQPPETAQPSVTSPSQPEVPVKQEPEIKEERLDEYIEVASPPPPVETPPSPAPVVKQEKPDDE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_01178881;
- 80% Identity
- -