Ccec034087.2
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- -
- Assembly
- GCA_001625245.1
- Location
- LUGF01058214.1:188406-203884[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-16 5.9e-13 49.3 0.0 6 70 240 302 237 306 0.88 2 2 1.4 5.8e+03 -1.9 0.0 33 58 470 497 439 504 0.73
Sequence Information
- Coding Sequence
- ATGTCTGACGAAATGGCGATTGGTGAAAAAACATCAAACAATGACCAAACGCCAGATAGTGAGGGGACGATAGCCGATTCTAAAGACAGTTTAGAAGTACCACATGCTCTCCCTGATGGTCCAGTACAATCAACTAAAAGGGAGATGAATCTTCCTGAAGATGTACTAAATAATGAAACAAGTGACAGCATAACGGATAGAATAAGTGAGAAACTAGCAGAAATGGAAAGTGATCATGTTGAAGatgataaaattgaattaaaccaGGAGGAAAAGGGTCTCAAGCGTCGAGCTTCAACGGCATTcagtgatgatggtgatgaagaGTTTAAAGGCTTTGGTCAAGATGAACCGAGctttattccagattataacCGTATAGTTGAAAATGTTGAGGGGAATGTACGTAGAAAATCAACTTCAAGTGAAAATGGTGAAGAATTCAAAGGATTTGAGAGCAGTGACCAAAAGAATTTATCTGCATATAACCAGGCTTTAGAACGTTTGGAGACTGAGCTGTCGGAGGCTGTGAAGGGCTTTACACCGCTGAAGACTGTGATGGCTGTGCCAGCTGCAGCGAGGGCCAGTAAGAGAGCCCGCCAAGATACAGAAGGATCCAGACCGTCGTCCGCTCTGTCCTCCAGATCAGAAGGTGAAGGGACACTGTCAACTgatGGCGGACGTTCGCGGCGACCGACGACGGAGATGTCTGCGCCGCAGTTGCGCGTGCCGCTCGAGCGCGGCTGGCGGCGCGAGCTGGTGTACCGCGCCGCGCTCGACGCGCactcgcgccgcgccgccgacATCTACTACTACACGCCCGCCGGCAAGAAGCTGCGCTCCATGAGAGAGGTGACAGAAGTGCTGTCGGGGACAGGTCTCACCACAGAGAACTTCTCATTCTTCAAAGAGCCGCTGGGTATTGATGATCCAGAGAAGGAGATCATTCGTGACGCGAAGATGATGCGTCGTGTCGAGTCCCCGGTGCCCGCTGTCCACACGCCAGTGCTGGAGGGCAAGCGGACCCCCAAGCCCAAGCCGCCTAAAGGAGCCAGCCCCGAACCTACGCCCAAGTCGCCGCCTGCTAAACTTAAGgtGAAGTCCATGGGTGCCCGTCTGAACAGCCCCGCCACAGCGACTCCGCCCACACCGAAGCAGGTGCGCAAGCCGGCCACGCCCACCGCGCCGGCCCCACCCGACAACAACAACACGCCGCAGACCGCCTGGAAGAAGCCCAGAGTCTCACAATACCTACGGACAAAATGCATTGTCATCACTCAACATCAGTGTCTTGTGAGCGACAAGTCTTCTATGGAAATACGTTTGAAAAAGGCGGGCGCGACCGTGCAGCCGTGCTCGATGGcatgcgggcgcggcgcggtgcCGTCGCTGGCGTGCGGCGCGTGCCTGTGCCTGTACCACCCCGCGTGCGTCGGCGCCACCGCGCAGCAGCTGCAGCGCCCCGCCGACTTCCTGTGCAAGaaCTGCCGTAAGAGTTCGTCCCCACCTCTGGAGTCGGCTCCTGCGCCGCACAAGTCGGTTGCCCCGCCCACTGCGGTCGCGGCCCCGCGCCGCATGCCCGTACCCGTGCCCGCCAAGGTGCCGCGCCCCGAAAAGCGACCCGTACCGAGAATGAAGGCGAGCGGGGCGGGCGGCAGCGCGGGGGGCGGACcgtgggcggcggcggcgggcccGCAGTCGCTGGCGGTGCTCAACGGCCGCCGGTTCATCGTCGTCGCGCGTCCCGCTAACACCTGA
- Protein Sequence
- MSDEMAIGEKTSNNDQTPDSEGTIADSKDSLEVPHALPDGPVQSTKREMNLPEDVLNNETSDSITDRISEKLAEMESDHVEDDKIELNQEEKGLKRRASTAFSDDGDEEFKGFGQDEPSFIPDYNRIVENVEGNVRRKSTSSENGEEFKGFESSDQKNLSAYNQALERLETELSEAVKGFTPLKTVMAVPAAARASKRARQDTEGSRPSSALSSRSEGEGTLSTDGGRSRRPTTEMSAPQLRVPLERGWRRELVYRAALDAHSRRAADIYYYTPAGKKLRSMREVTEVLSGTGLTTENFSFFKEPLGIDDPEKEIIRDAKMMRRVESPVPAVHTPVLEGKRTPKPKPPKGASPEPTPKSPPAKLKVKSMGARLNSPATATPPTPKQVRKPATPTAPAPPDNNNTPQTAWKKPRVSQYLRTKCIVITQHQCLVSDKSSMEIRLKKAGATVQPCSMACGRGAVPSLACGACLCLYHPACVGATAQQLQRPADFLCKNCRKSSSPPLESAPAPHKSVAPPTAVAAPRRMPVPVPAKVPRPEKRPVPRMKASGAGGSAGGGPWAAAAGPQSLAVLNGRRFIVVARPANT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -