Cspl116035.1
Basic Information
- Insect
- Calopteryx splendens
- Gene Symbol
- -
- Assembly
- GCA_002093875.1
- Location
- LYUA01006961.1:47906-50463[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0013 40 7.1 0.0 26 46 7 27 4 35 0.88 2 13 0.14 4.2e+03 0.6 0.0 22 52 31 61 26 63 0.84 3 13 0.024 7.1e+02 3.1 0.0 21 46 58 83 56 90 0.88 4 13 0.0096 2.9e+02 4.3 0.0 22 47 87 112 84 119 0.86 5 13 0.011 3.3e+02 4.1 0.0 22 45 115 138 109 142 0.88 6 13 0.094 2.8e+03 1.2 0.0 22 45 143 166 138 173 0.89 7 13 0.22 6.6e+03 -0.0 0.1 26 48 175 197 168 206 0.82 8 13 0.77 2.3e+04 -1.8 0.0 22 44 199 221 191 226 0.75 9 13 0.0012 35 7.3 0.0 22 45 227 250 218 257 0.87 10 13 0.34 1e+04 -0.6 0.0 23 45 256 278 252 287 0.82 11 13 0.99 3e+04 -2.1 0.0 22 44 283 305 278 310 0.74 12 13 0.0019 58 6.6 0.0 22 44 311 333 302 337 0.87 13 13 0.002 60 6.5 0.0 23 44 352 373 345 378 0.89
Sequence Information
- Coding Sequence
- ATGCACGTTCCGCGACACGTATGTGGCACGTGTTACAAGGAGTTCCCGAGCAGTAATAACCTGAAGAGACACATGTCCGTGCACACGCGTGAGAAATCGTTCGCGTGCAAAATGTGCTCAAAGGCGTTCGCCCAGAGGAGCGAACTTAACACCCACATGGTGCTGCACTCTGGAGAGAAGCCCTTCATCTGTGGTGTGTGCTCCAAGGCGTTCGGGGAAAAAGCAACGCTCAAGAGACACATGACCGTGCATACCGGAGATAGGCCGTTCAAGTGTGCCGTGTGCTGTAAGGCGTTCTGGGATAGCGGAGGGCTGAAGAGACACATGTCCGTGCACACCGGAGACAGACCGCACATTTGTGCCGTGTGCTCCAAGGCGTTCGGGGATAGCGGAGGGCTCAAGAGACACATGGCGGTGCACACAGGAGAGTGGCCCCACATCTGCGGTGTGTGCTCCAAGGGTTTCGGGTATAGCAAATCGCTCAAAAACCATATGGCCGTGCACACCGGAAACTGGGCGCACAAGTGCGCCGTGTGCTCCAAGGGCTTCAGCTCGTGCAGGTCCCTGAAGGATCACTTGAGGACGCACACCGGAGACAAACCGCACAAGTGCGGGGTGTGCTCCAAGGGCTTCGGAACAATCAGCGCCCTCAGGACACACATCAGAACGCATACCAAAGAAAAGTCTCACAAGTGTGCCGTGTGCTCCAAGACATTCGGGGAAAGCAGAACGCTCAAGAGACACATGGCCTTTCACACCGGAGACGTGCCGCACAAGTGCGCCGTGTGCTCAAAGGGCTTCAGCAATAAAACGAACCTGATGGATCACTTATGGACACACACTGAAGACAAGCCGCACAAGTGCGTAGTGTGCTCCAAGGGCTTCAGCTCGATCATCATCCTCAGGAAACACATGGCAACGCACGCCAAAGAAAAGTCTTACAAGTGTGCCGTGTGCTCCAAGACATTCGGGGAAAGCAGATCGCTCAAGAGACATATGCCCTTTCACACCGGAGACTGGGCGTACAAGTGCGCCGTAACGCACTCCAAAGGCAAGCCTTACAAGTGTGCCGTGTGCTCCAAGGCGTTCGGGCAAAGCGGAACGCTCAAGAGACATATGGTTGTGCACACCAAAGACAGTTTCACCAATGCGCCCTGTGCGACAAGGCGTTCGCGACTACGGGTAACCTCAAAACCACATTATCGTGCACACGAAAGTGAGATCCCACTCGTGCAGCATGAGTTCCAGCGTTCACCCAATTGA
- Protein Sequence
- MHVPRHVCGTCYKEFPSSNNLKRHMSVHTREKSFACKMCSKAFAQRSELNTHMVLHSGEKPFICGVCSKAFGEKATLKRHMTVHTGDRPFKCAVCCKAFWDSGGLKRHMSVHTGDRPHICAVCSKAFGDSGGLKRHMAVHTGEWPHICGVCSKGFGYSKSLKNHMAVHTGNWAHKCAVCSKGFSSCRSLKDHLRTHTGDKPHKCGVCSKGFGTISALRTHIRTHTKEKSHKCAVCSKTFGESRTLKRHMAFHTGDVPHKCAVCSKGFSNKTNLMDHLWTHTEDKPHKCVVCSKGFSSIIILRKHMATHAKEKSYKCAVCSKTFGESRSLKRHMPFHTGDWAYKCAVTHSKGKPYKCAVCSKAFGQSGTLKRHMVVHTKDSFTNAPCATRRSRLRVTSKPHYRAHESEIPLVQHEFQRSPN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00261366;
- 90% Identity
- iTF_00261366;
- 80% Identity
- iTF_00261366;