Basic Information

Insect: Callosobruchus maculatus
Gene Symbol: -
Assembly: GCA_900659725.1
Location: CAACVG010007426.1:6806-37544[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.027 1.9 9.2 0.2 1 21 211 231 211 232 0.95

2 14 0.29 20 6.0 0.7 3 23 265 286 264 286 0.90

3 14 0.0027 0.19 12.4 6.9 1 23 298 320 298 320 0.98

4 14 0.00024 0.017 15.7 2.7 1 23 332 355 332 355 0.97

5 14 0.042 3 8.6 8.4 1 23 367 390 367 390 0.96

6 14 0.00077 0.055 14.1 4.1 1 23 402 425 402 425 0.95

7 14 0.0016 0.11 13.1 5.7 1 23 437 460 437 460 0.96

8 14 0.011 0.77 10.4 0.7 1 23 472 495 472 495 0.91

9 14 1.8 1.3e+02 3.5 0.6 3 19 509 525 507 527 0.85

10 14 0.01 0.7 10.6 6.5 1 23 537 560 537 560 0.94

11 14 0.012 0.84 10.3 1.4 1 23 569 592 569 592 0.95

12 14 1 73 4.2 8.4 1 23 604 627 604 627 0.94

13 14 0.00078 0.055 14.1 0.3 1 23 639 662 639 662 0.97

14 14 0.21 15 6.4 9.5 1 23 674 696 674 696 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.027	1.9	9.2	0.2	1	21	211	231	211	232	0.95
2	14	0.29	20	6.0	0.7	3	23	265	286	264	286	0.90
3	14	0.0027	0.19	12.4	6.9	1	23	298	320	298	320	0.98
4	14	0.00024	0.017	15.7	2.7	1	23	332	355	332	355	0.97
5	14	0.042	3	8.6	8.4	1	23	367	390	367	390	0.96
6	14	0.00077	0.055	14.1	4.1	1	23	402	425	402	425	0.95
7	14	0.0016	0.11	13.1	5.7	1	23	437	460	437	460	0.96
8	14	0.011	0.77	10.4	0.7	1	23	472	495	472	495	0.91
9	14	1.8	1.3e+02	3.5	0.6	3	19	509	525	507	527	0.85
10	14	0.01	0.7	10.6	6.5	1	23	537	560	537	560	0.94
11	14	0.012	0.84	10.3	1.4	1	23	569	592	569	592	0.95
12	14	1	73	4.2	8.4	1	23	604	627	604	627	0.94
13	14	0.00078	0.055	14.1	0.3	1	23	639	662	639	662	0.97
14	14	0.21	15	6.4	9.5	1	23	674	696	674	696	0.97

Sequence Information

Coding Sequence: ATGGAGGACAACATGCCACCAATTAAAGatgaaattggaaaaataaaaaaggaaagCTTTGCAGAAATAGATGTCCTACACAACACAGTTGATTCAGCGATCAAAACCGAGAGCTATGCATGTACAAATGGAATATGGGATTTGCCTTTCACAAGAGTGAAAGACGAGCAAAGCATGGAGAATTTGGAACAATGTGAACTGAATTTTGACACAAAGGAACACATAAAAATGGAAAACATAGCAGCAGTTGATGTTGAAGTACAGGAATCTGAAATGGACAGCTTGAAACTCGATATTCGGACTGAAGAACTGTACAAGTACATCAAACCTGACattgaaaatgttgaaaaatctGATGGAGTGAAAGAAGAGCAAAGCACAGAGGATAGAGAAAAATATGAACTGACTTGTGATACAAAAGAACACATAAACATCGAAGATATGTCAGCAGTTGATGTTAAAATTGAAGTACAGGAATCTGAAATCGACAGCCTGAAACAGGATATGCTGACTGAGGAGATAGATATCAAACCTGACATTGGAGATGATGCAGAATCATACGGtgGTGCAAAACAAACACTGAGTGAAGACAAACATGGAGTGGTGTATAGGAAGTCTGATGAAGACACCTTCGTCTGCTATATTTGCAATTTCATCGTTCACAGCAAGAAAGATTTGATAAATCACATCAACGTTTCAGGTTGTAGTTTAAAGAGTCGTGCTAAAAAAGCGTTAgctattaacaaaataatagaATATCCTGAAGCTCAGTATCCTGTTAAAAAAAGACAGTGTATTCATTGCAATGCGACATTCAAAAGTCAACAAGCTCTTGATGGCCATGTTATAAAATATCATGAAGAGTTTATTACATTTATTTCTTCTAAAATTTATCAGTGTAAACACTGTAGTTATAAAACCACAAAAACGACTAATTTAACTCGTCATTTAACGAAACATCCTGAATCTGGGTGTGGTGTTACACCTAAACAGTATCCTTGTAACCATTGCCATgcgatatttaaaagaaaaacatcTCTTGATGACCATATCATCAGAAATCACGAAGACTTTGTTACATCAGTTTCTTCTAAAATCCATCATTGTAAACATTGTAGttataaaactacaaatataacTAACTTGACTCGTCATTTGACGACTCTTCATGCTGAATATTGGTGTAGCGTTACACCTGAACAGTACCCTTGTGAACATTGCCATACGATCTTCACAAGGAAAATACATCTTGATGACCATATCGTCAAAAATCATGAAGCGGTTTTTACATCTGTTTCTTCTAGAATCCATCAGTGTAAATATTGTAGTTATAAAACTACCATGTCGTctaattttactcgtcatttgAAGAATCTTCATCCTGAATCTTGGCGTAGCATTGTATCTATACAGTATCCTTGTATCTATTGCGATGCGACATTTACAAGAAAAGAACATATtaacgaccatgtcgtcagaaATCATGAAGAATTGATTACACCTGTTTCTTCTGAAAATTGGCATTGTATTCATTGCAATGCGACATTCAAAAGTAAACAATCTCTTGATGGCCATGGAGAATTTATTACATCAGTTTCTTCTCCAATCCATCAGTGCAAACATTGTAGCTATAAAACTACAAAATCGACTAATTTGTCTCGTCATTTGACAAATGTTCATGAGTGTAGTGTTACACCTAATCAGTATGCTTGTAATCATTGCCATGCCATATTTAAAGTAAAAGAATCTCTTGATGGACATGTCCTCAGAAATCATGAAGAATTTATTACATCTGTTTCTTCTAAAATCCATCAGTGTAAACATTGTAATTATAAAACTACAATAATGGCTAACTTCACTCGTCATTTGACGAATTGTCATCCCGAATCTTGTTGTAGTGTTAGATCTAAACAGTATCCTTGTGACCATTGCCGTGCAATATTTAAAAGCAAAGCAGCTCTTGATGACCATATCATCAGAAATCATGAAGAGTTTATTTCATCAGTATCTTCTAAAATCCATCGGTGTAAACATTGCACTTATAAAACTTCAAATATAACTAATTTGACTCATCATTCGATGAAACATCTTGAATCTGGGTAA
Protein Sequence: MEDNMPPIKDEIGKIKKESFAEIDVLHNTVDSAIKTESYACTNGIWDLPFTRVKDEQSMENLEQCELNFDTKEHIKMENIAAVDVEVQESEMDSLKLDIRTEELYKYIKPDIENVEKSDGVKEEQSTEDREKYELTCDTKEHINIEDMSAVDVKIEVQESEIDSLKQDMLTEEIDIKPDIGDDAESYGGAKQTLSEDKHGVVYRKSDEDTFVCYICNFIVHSKKDLINHINVSGCSLKSRAKKALAINKIIEYPEAQYPVKKRQCIHCNATFKSQQALDGHVIKYHEEFITFISSKIYQCKHCSYKTTKTTNLTRHLTKHPESGCGVTPKQYPCNHCHAIFKRKTSLDDHIIRNHEDFVTSVSSKIHHCKHCSYKTTNITNLTRHLTTLHAEYWCSVTPEQYPCEHCHTIFTRKIHLDDHIVKNHEAVFTSVSSRIHQCKYCSYKTTMSSNFTRHLKNLHPESWRSIVSIQYPCIYCDATFTRKEHINDHVVRNHEELITPVSSENWHCIHCNATFKSKQSLDGHGEFITSVSSPIHQCKHCSYKTTKSTNLSRHLTNVHECSVTPNQYACNHCHAIFKVKESLDGHVLRNHEEFITSVSSKIHQCKHCNYKTTIMANFTRHLTNCHPESCCSVRSKQYPCDHCRAIFKSKAALDDHIIRNHEEFISSVSSKIHRCKHCTYKTSNITNLTHHSMKHLESG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260803;
90% Identity: iTF_00260803;
80% Identity: iTF_00260803;