Cmac005422.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010006787.1:210293-221342[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00035 0.025 15.1 3.0 1 23 38 60 38 60 0.98 2 11 1.4 1e+02 3.8 4.6 1 23 67 89 67 89 0.97 3 11 0.0029 0.21 12.2 5.0 1 23 141 163 141 163 0.98 4 11 3.8e-05 0.0027 18.2 1.2 2 23 171 193 170 193 0.94 5 11 0.019 1.4 9.7 2.8 1 23 205 228 205 228 0.97 6 11 0.011 0.77 10.5 2.1 3 23 239 260 238 260 0.90 7 11 0.0014 0.099 13.2 3.7 1 23 272 294 272 294 0.97 8 11 0.0021 0.15 12.7 0.7 3 23 307 328 305 328 0.90 9 11 0.00095 0.067 13.8 3.2 1 23 340 363 340 363 0.97 10 11 0.00016 0.012 16.2 0.6 2 23 374 396 374 396 0.96 11 11 0.11 7.7 7.3 4.4 1 23 408 431 408 431 0.97
Sequence Information
- Coding Sequence
- atGAACAGCAAAAAAGGAGGAATTTTCGAGAGGGCGAAAATTCTCACGGAAAATGAAATACCGAGGAAAAATCAAGAAGTAGTAGCTGATAAGGAGACTGATGGAGACACATTCGTTTGCTATCACTGCGAATACGTCGCTAGAAGTAAACGACATTTGATTGATCACATGAAAGTGCATAGGAACaggaaatatatttacagctgtTGTTATTGCGATTTTCGAACAAATTCAGGAATATTATTTACCACCCACAATAAGACACATTCATCAGAGAGTAAGCAGTTCGAAGCGTTACATCTAAAAGAGGAAAATATGGATGGCAATTTTAGTCAAGGGAATGCCATGTTGATTGATTCAGAAACTAGTGTAGTAAGTAAAAGGTCCAGTAGAGCCAGAGAATCACTTAGTAGCAAAGTTCACCAGTGTACAAAGTGCAATTATAAAACTATCAATACTAAATATTTGAAGCGACATTTGGTAACACATTCTGATAATCGTATAATCAGTAGATGCTTATACTGTAATAAAACATTTACACGTAAAGAAACACTAGATGATCATATAGTAAGAAGTCATCCTGACTTTATAGCATCGGTCAGTAGAAAAGTCCACGAGTGTACgaagtgcacttataaaactacgaTTTCTTCAAATATCAGGCAACACTTAATTACGAATCATCCCGAGATAGCTGATAATGTAGTTAGTAGCTGTATTCactgtaataaaatattttcacgtaaACAAACACTAGACGATCACATAGTTAGaagacatcctgattttatagcatcggttaGCAGCAAAGTCCACGAGTGTAAGAAGTGTACTTATAAAACTGTTTACACCAGTGATTTGAAGCAACATATGGTAACACATTCTGATATAGACGATAATAATCATATAGATAGTAGATGCATCTACTGTGATACGACATTTACACGTAAAGAAACACTAGACGATCACATAGTTAGaagacatcctgattttatagtatcggttagcagcaaagtccacgagtgtacgaagtgcacttataaaactacgaAACCTTCAAATATCAGGCGACATTTAATTACGAATCATCCCGAAATAGCTGATAATCGCATTCTTAATAGATGTGTCTACTGTAATAAGACATTTAAATATAAACAAGGGCTGGATGAtcacataataaaaatacatccgGATTTTACAGCATCAGTTAGCAGCAAAGTCCACGAGTGTATgaagtgcacttataaaactacgaGTACTACAAGTATCAGGCGACATTTAAATACGAATCATCCCGAGATAGCTGGTAGTAGTTAG
- Protein Sequence
- MNSKKGGIFERAKILTENEIPRKNQEVVADKETDGDTFVCYHCEYVARSKRHLIDHMKVHRNRKYIYSCCYCDFRTNSGILFTTHNKTHSSESKQFEALHLKEENMDGNFSQGNAMLIDSETSVVSKRSSRARESLSSKVHQCTKCNYKTINTKYLKRHLVTHSDNRIISRCLYCNKTFTRKETLDDHIVRSHPDFIASVSRKVHECTKCTYKTTISSNIRQHLITNHPEIADNVVSSCIHCNKIFSRKQTLDDHIVRRHPDFIASVSSKVHECKKCTYKTVYTSDLKQHMVTHSDIDDNNHIDSRCIYCDTTFTRKETLDDHIVRRHPDFIVSVSSKVHECTKCTYKTTKPSNIRRHLITNHPEIADNRILNRCVYCNKTFKYKQGLDDHIIKIHPDFTASVSSKVHECMKCTYKTTSTTSIRRHLNTNHPEIAGSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00260794;
- 90% Identity
- iTF_00260794;
- 80% Identity
- iTF_00260794;