Cmac001551.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Callosobruchus maculatus
Gene Symbol
-
Assembly
GCA_900659725.1
Location
CAACVG010001818.1:215413-270404[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.00014 0.01 16.4 2.0 1 23 403 425 403 425 0.97
2 24 4.9e-05 0.0034 17.8 2.0 1 20 431 450 431 453 0.94
3 24 8.5e-05 0.006 17.1 1.0 1 23 459 481 459 481 0.98
4 24 0.0011 0.075 13.6 4.2 3 21 489 507 487 509 0.94
5 24 0.00016 0.011 16.2 4.7 1 23 515 537 515 537 0.99
6 24 3.1e-05 0.0022 18.5 5.3 1 23 543 565 543 565 0.97
7 24 1.1e-05 0.0008 19.8 8.2 1 23 571 593 571 593 0.97
8 24 1.2e-07 8.4e-06 26.1 2.7 1 23 599 621 599 621 0.98
9 24 8.8e-05 0.0062 17.0 6.7 1 23 627 649 627 649 0.97
10 24 0.00012 0.0084 16.6 4.8 1 23 655 677 655 677 0.97
11 24 3.9e-07 2.7e-05 24.4 2.9 1 23 683 705 683 705 0.98
12 24 1.5e-06 0.00011 22.6 6.5 1 23 711 733 711 733 0.98
13 24 3.4e-05 0.0024 18.3 9.1 1 23 739 761 739 761 0.98
14 24 2.3e-06 0.00016 22.0 3.0 1 23 767 789 767 789 0.98
15 24 3.8e-05 0.0027 18.2 7.8 1 23 795 817 795 817 0.98
16 24 7.7e-07 5.4e-05 23.5 7.0 1 23 823 845 823 845 0.99
17 24 2.3e-06 0.00016 22.0 3.0 1 23 851 873 851 873 0.98
18 24 7.5e-06 0.00053 20.4 7.7 1 23 879 901 879 901 0.98
19 24 7.7e-07 5.4e-05 23.5 7.0 1 23 907 929 907 929 0.99
20 24 2.1e-05 0.0014 19.0 7.7 1 23 935 957 935 957 0.98
21 24 1.6e-05 0.0012 19.3 7.2 1 23 963 985 963 985 0.97
22 24 0.00047 0.033 14.8 0.1 1 23 991 1013 991 1013 0.97
23 24 0.11 7.5 7.3 5.0 1 23 1023 1045 1023 1045 0.98
24 24 1.6e-08 1.1e-06 28.8 0.9 1 23 1051 1073 1051 1073 0.98

Sequence Information

Coding Sequence
ATGAATAGTGATAATCAGGGTGTCCTGTCAGGGCACAATTCAGCAAATTCAGAGAATTCTTCCCAAAGACCCCCGCCCACAACATCAGTACCCACTGACTTGAGAGTCAACACTACAGCCTTGAATGCAGTAGCTTTGAGCAGTGTTGCAAAGTACTGGGTATTGACAAATCTTCTACCTGGTCCCATCCCACAGGTGTCAGTGTATGGCTTACCAGGCACCAGTAGGGATAATCAGGGTAAAATTCCACAGGATGCTGCTATGCTCAGCCAGCACGGCATTCTACCGACAGACCCCTCACTGCTTCTGCAACAGCACGCCCAGATACCCGTTAGCATCTCCACTTCCCAGGGCAACATCAGCATCCCAGCAGGAGCGATTCAATTGGAGGGGGCTCACATCAACCCTAATCAACATCAGAATGAGGCCATGGCAGCACAAAATCATTTGTCAAGAGATATCAGGATGGCCCACACCCAGCAACAGGCACCCCAGCAAAATCAACAACAACACCAACCACAGCAGCAGCAACAGCCACCTCAGCCTCAACAACAGCATGGACCACAGCAGCCCCAGCAACAAAACATGGTTCAAGTTCAGTTACAGGCTGCGCAATTGCAAATGACTGGTGAGAACCAACTGAACCAGCAACAGGCCTTGACCGTGCAACAGCTACAACAGTTGCAGGTGCAGCAAGTTTTAGACAATGTGGTGAGATTTGAGAATTCATTAGAGACGAACCAAAACCAGTCGAATAACCAAGCGTTTCTAGTTCAATTCGAAAAAGCCCTTCAAAACTACCGGCCGGTCATATCTGGAGCGTTGTCTGGTTTGCAGGACCTCAAAGCCAACATGATGGACGTGAGGACAGCGGATGGCAGCATAGTCAAAATACAAACTAATATTCAAGAGCAGGAATTGGTCAAGACCCTTGGCGTAGATATTGTTCAGAATATGTATAAGGTGAATGTGGATGATCTCAATCATCTGCTGGCGTATCATGAGATTTTTGGAAAGCTACAGGGCAATCAAGGTGAGGTGTCAAACAATAATCAGAACGTCCAAACTTCAACTAATACcaataacaacaacaacaacaatataAACATGCAACAAAGCACCCCAAGTCTTGCCATAATCGCTAAGGATGAACAAGAAGCGTCCACAAGCAACGTTACAAATGATACAAACAACTCGGTCGGAACTCATGTCTGTGATCTTTGTGGAAAGATATTCCAGTTTCGTTACCAGCTCATCGTTCATAGGCGATACCACACCGAAAGAAAACCATTCACTTGTCAGGTGTGTGGTAAAGCTTTCACGAATGCACAAGAGCTTACAAAGCATGGTAAATGTCACCTAGGAGGCAGCATGTTCACTTGTGCGATATGCTTCCACGTTTTCGCCAATGATGCATCCCTCGAAAGGCACATGAAGAGGCATTCAACAGACAAACCGTACGGATGCTCCACATGCGGAAAAAGTTTCGCGAGAAAGGAGCATCTTGATAATCACACGAGATGTCACACTGGAGAGACACCTTACAGATGTCAGTTCTGTGCGAAAACGTTTACAAGAAAGGAACACATGGTGAATCACGTGAGAAAACATACTGGCGAGACACCGCACCGATGCGAGATATGCAAGAAGTCTTTCACGAGAAAAGAACACTTCATGAATCACGTGATGTGGCATACGGGAGAAACGCCACACCATTGCACTATATGCGGCAAGAAGTACACGAGGAAAGAACATCTGTCGAACCATATGAGGAGCCATACAAACGACACGCCGTTCAGATGTGAAATATGCGGCAAATCATTCACGAGAAAAGAGCATTTCACAAATCACATAATGTGGCATACGGGAGAAACCCCGCATCGTTGCGATTTCTGCTCGAAGACTTTCACAAGGAAGGAACATCTGCTGAACCACGTCAGGCAACATACGGGTGAGTCTCCGCACAGGTGCGGCTTCTGCGCCAAGTCGTTCACTAGGAAGGAGCACTTGATCAATCATGTCAGGCAACATACAGGTGAAACCCCATTCAGATGTAACTACTGCCCGAAAGCGTTCACTAGAAAAGACCACCTGGTGAATCATGTCAGGCAGCACACTGGAGAATCTCCGCATAAATGCCCATATTGTACAAAATCTTTTACCAGAAAGGAGCATCTAAACAACCATGTCAGGCAACATACAGGAGAGTCGCCTCATAGGTGTCATTTTTGCTCCAAGTCATTCACTAGGAAAGAGCATCTGACCAATCACGTTCGGATACATACTGGTGAAACGCCATTCAGGTGTAGCTACTGTCCGAAGGCATTTACCAAGAAAGATCACCTGGTGAACCATGTTAGGCAACATACGGGAGAAACTCCGCACAAGTGCACGTTCTGTTCGAAATCCTTCACTAGGAAGGAACATTTGAATAATCACGTGAGACAACATACTGGGGAATCACCGTATAGATGTCATTACTGTTCAAAGTCCTTCACTAGAAAAGAGCACCTGACCAATCATGTTCGGATACATACTGGTGAAACGCCGTTCAGGTGCAGCTACTGTCCGAAGGCGTTCACCAAGAAAGATCACCTGGTGAACCATGTTAGACAACATACTGGAGAAACTCCACATAAGTGCACGTACTGTTCAAAATCTTTCACTAGAAAGGAGCATTTGACCAATCATGTGAGACAACATACTGGGGAATCACCTTATAGATGTCATTACTGTTCAAAGTCGTTCACTAGAAAAGAACATCTGACCAATCATGTCCGGATACATACCGgcgAGTCTCCACACCGTTGCGAATTCTGCCAAAAAACGTTTACGCGGAAAGAACACCTGACCAACCACCTTCGCCAGCACACGGGCGAGACACCGCATTGCTGCAACGTATGCCAGAAGCCGTTTACAAGGAAAGAGCACCTGGTGAATCACATGAGGTCACATACCGGCGAAAGACCATTTGCTTGCGGGGAGTGCGGGAAGGCGTTCCCTTTGAAAGGCAACCTGCTCTTCCATCAGAGGTCGCATAACAAAGGGGCCACTGCCGAAAGGCCGTTCAGATGTGATCTGTGTGAAAAAGACTTCATGTGTAAAGGTCACTTGGTCTCTCACAGGAGATCTCACATCGGTGAAAGGCCTCACGTTTGTCCGGATTGCGGGAAGACTTTCGTAGAAAAAGGAAACCTGTTGAGGCATATGAGGAAGCATACGGAGAACGGACAGGGTCAACCGTCTCAGGCACCTAATCCTGTACAACCCGGCCAGCCTCAGCAGCCCCCGCCACAGAACCAGGCGCCACCACAACCTCAGAACAATCCGACGACCACCGGTAACATCCAGATACCTCAGGTGCCTGTGGTGAGTCAGCCTCAACCTCCGCCTCAGCCCACCGTAGTGCAGTCGCCACACATCCAAATGCATCAGACGGCGCCGCATCCAGTTGTCGTGCCAACTGCAAACGGCAACGTCCTAACATCCTATTAG
Protein Sequence
MNSDNQGVLSGHNSANSENSSQRPPPTTSVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGTSRDNQGKIPQDAAMLSQHGILPTDPSLLLQQHAQIPVSISTSQGNISIPAGAIQLEGAHINPNQHQNEAMAAQNHLSRDIRMAHTQQQAPQQNQQQHQPQQQQQPPQPQQQHGPQQPQQQNMVQVQLQAAQLQMTGENQLNQQQALTVQQLQQLQVQQVLDNVVRFENSLETNQNQSNNQAFLVQFEKALQNYRPVISGALSGLQDLKANMMDVRTADGSIVKIQTNIQEQELVKTLGVDIVQNMYKVNVDDLNHLLAYHEIFGKLQGNQGEVSNNNQNVQTSTNTNNNNNNNINMQQSTPSLAIIAKDEQEASTSNVTNDTNNSVGTHVCDLCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELTKHGKCHLGGSMFTCAICFHVFANDASLERHMKRHSTDKPYGCSTCGKSFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLSNHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCAKSFTRKEHLINHVRQHTGETPFRCNYCPKAFTRKDHLVNHVRQHTGESPHKCPYCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGETPFRCSYCPKAFTKKDHLVNHVRQHTGETPHKCTFCSKSFTRKEHLNNHVRQHTGESPYRCHYCSKSFTRKEHLTNHVRIHTGETPFRCSYCPKAFTKKDHLVNHVRQHTGETPHKCTYCSKSFTRKEHLTNHVRQHTGESPYRCHYCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCQKPFTRKEHLVNHMRSHTGERPFACGECGKAFPLKGNLLFHQRSHNKGATAERPFRCDLCEKDFMCKGHLVSHRRSHIGERPHVCPDCGKTFVEKGNLLRHMRKHTENGQGQPSQAPNPVQPGQPQQPPPQNQAPPQPQNNPTTTGNIQIPQVPVVSQPQPPPQPTVVQSPHIQMHQTAPHPVVVPTANGNVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00249132;
90% Identity
iTF_00249132;
80% Identity
-