Bsil005222.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bruchidius siliquastri
Gene Symbol
-
Assembly
GCA_949316355.1
Location
OX438531.1:13751799-13780627[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.00014 0.011 16.4 2.0 1 23 397 419 397 419 0.97
2 24 4.8e-05 0.0036 17.9 2.0 1 20 425 444 425 447 0.94
3 24 8.3e-05 0.0062 17.1 1.0 1 23 453 475 453 475 0.98
4 24 0.00025 0.019 15.6 3.5 3 21 483 501 481 503 0.94
5 24 0.00016 0.012 16.2 4.7 1 23 509 531 509 531 0.99
6 24 3e-05 0.0022 18.5 5.3 1 23 537 559 537 559 0.97
7 24 1.1e-05 0.00083 19.9 8.2 1 23 565 587 565 587 0.97
8 24 1.2e-07 8.7e-06 26.1 2.7 1 23 593 615 593 615 0.98
9 24 8.6e-05 0.0064 17.0 6.7 1 23 621 643 621 643 0.97
10 24 0.00012 0.0087 16.6 4.8 1 23 649 671 649 671 0.97
11 24 3.8e-07 2.8e-05 24.5 2.9 1 23 677 699 677 699 0.98
12 24 1.5e-06 0.00011 22.6 6.5 1 23 705 727 705 727 0.98
13 24 3.3e-05 0.0025 18.3 9.1 1 23 733 755 733 755 0.98
14 24 2.3e-06 0.00017 22.0 3.0 1 23 761 783 761 783 0.98
15 24 7.2e-06 0.00054 20.4 7.6 1 23 789 811 789 811 0.98
16 24 7.5e-07 5.6e-05 23.5 7.0 1 23 817 839 817 839 0.99
17 24 2.3e-06 0.00017 22.0 3.0 1 23 845 867 845 867 0.98
18 24 7.3e-06 0.00055 20.4 7.7 1 23 873 895 873 895 0.98
19 24 7.5e-07 5.6e-05 23.5 7.0 1 23 901 923 901 923 0.99
20 24 2e-05 0.0015 19.0 7.7 1 23 929 951 929 951 0.98
21 24 1.6e-05 0.0012 19.3 7.2 1 23 957 979 957 979 0.97
22 24 0.00046 0.034 14.8 0.1 1 23 985 1007 985 1007 0.97
23 24 0.1 7.8 7.3 5.0 1 23 1017 1039 1017 1039 0.98
24 24 2.2e-07 1.7e-05 25.2 0.9 1 23 1045 1067 1045 1067 0.96

Sequence Information

Coding Sequence
ATGAATAGTGATAATCAGGCTGTCCTGTCAGGACACAACTCGGCAAACTCGGAGaattCTTCCCAAAGACCTCCACCCACAACATCAGTACCCACTGACTTGAGAGTCAATACTACTGCATTGAATGCAGTAGCTTTGAGCAGTGTTGCGAAATACTGGGTATTGACCAATCTTCTTCCAGGGCCTATCCCACAGGTGTCAGTATATGGCTTACCAGGTACTAGTAGGGACAACCAGGGTAAAATTCCACaggatGCAGCGATGCTCAGCCAGCACGGCATTTTGCCGACGGACCCTTCGCTACTTTTGCAACAGCACGCTCAGATACCCGTCAGCATCTCCACTTCCCAGGGAAACATTAGCATTCCGGCGGGGGCGATTCAATTGGAAGGAGCTCACATCAACCAACACCAGAACGAGGCAATGGCAGCGCAAAATCAAATGTCTCGAGACATAAGGatGGCACATACCCAGCAACAAGCAGCccagcaaggccagcaacaccaacagcagcagcaacagccGCCTCAGCAACAGCAACAGCATGGAGGTCAACAGCCTCAGCAACAAAACATGGTTCAAGTTCAGTTACAGGCTGCCCAGCTGCAAATGTCTGGCGAAAACCAATTGAGTCAGCAACAAGCCTTGACCGTGCAACAGCTACAGCAGTTGCAGGTGCAGCAAGTTTTAGACAATGTgGTGAGATTTGAGAATACATTAGAGACGAACCAAAACCAGTCGAATAACCAAGCGTTTCTAGTTCAATTCGAAAAAGCCCTCCAAAACTACCGGCCAGTCATATCTGGAGCGTTGTCTGGTTTGCAGGACCTCAAAGCCAACATGATGGACGTGAGAACTGCGGATGGCAGCATTGTCAAGATACAAACCAATATTCAAGAGCAGGAATTGGTCAAAACTCTTGGGGTAGATATTGTCCAGAATATgtataaggtcaatgtggatgaTCTCAATCATCTGCTGGCGTATCATGAGATTTTTGGAAAGCTACAGGGTAATCaagGCGAGGTCTCGAACAACAACCAGAACGTTCAAACATCaactaataacaataacaacaacaatataAACCTGCAGCAAAATACCCCGAGTCTTGCTATAATTGCTAAGGATGAACAAGAAGCGTCTACAAGCAACGTTACCAGTGATAGTAACAATTCAGTTGGTACTCATGTCTGTGATCTCTGTGGAAAGATTTTCCAGTTTCGTTACCAGCTCATCGTTCATAGGCGTTACCACACTGAAAGAAAACCATTTACGTGTCAGGTTTGTGGTAAAGCATTCACGAATGCTCAAGAGCTTACTAAGCATGGTAAATGTCATCTAGGTGGCAGCATGTTTACTTGTGCGATATGCTTCCACGTTTTTGCCAACGATGCGTCCCTGGAAAGGCACATGAAGAGGCATTCAACAGATAAACCTTACGGATGTTCTATATGCGGGAAAAGTTTCGCGAGAAAGGAGCATCTGGATAATCATACGAGGTGTCATACTGGTGAAACTCCTTACAGATGTCAGTTCTGTGCAAAGACGTTTACCAGAAAGGAACATATGGTGAATCATGTGAGAAAACATACTGGCGAGACACCGCATAGGTGCGAGATCTGCAAGAAATCTTTCACGAGAAAAGAACACTTCATGAATCATGTGATGTGGCATACGGGAGAAACACCTCATCATTGCACTATATGTGGCAAGAAATACACGAGGAAAGAACACCTTTCCAACCATATGAGGAGCCATACAAACGACACGCCGTTCAGATGTGAAATATGCGGCAAATCGTTCACGAGGAAAGAGCACTTTACAAATCACATAATGTGGCATACGGGAGAAACGCCTCATCGATGCGATTTCTGTTCGAAGACGTTCACGAGAAAGGAGCACTTGCTGAACCACGTCCGGCAACATACGGGTGAGTCTCCGCACAGGTGCGGCTTCTGCGCCAAGTCGTTCACTAGGAAGGAGCACTTGATCAATCATGTCAGGCAACATACAGGTGAAACCCCATTCAGATGTAACTACTGCCCAAAAGCATTCACCAGAAAAGACCACCTGGTGAATCATGTCAGGCAGCACACTGGAGAATCTCCGCATAAATGCCCGTATTGTACAAAATCTTTTACCAGAAAGGAGCACCTAAACAACCATGTGAGACAACATACAGGAGAGTCGCCTCACAGGTGTCATTTTTGCTCCAAGTCATTCACTAGGAAAGAACATCTGACCAATCACGTTCGGATACACACTGGTGAAACGCCATTCAGGTGTAGCTACTGTCCGAAGGCATTCACCAAGAAAGATCACCTGGTGAACCATGTTAGACAACATACGGGAGAAACGCCACATAAGTGCACGTACTGTTCAAAATCTTTCACTAGGAAGGAACATTTGAACAATCACGTGAGACAACATACTGGGGAGTCGCCTTATAGATGTCATTACTGTTCAAAGTCCTTCACTAGAAAAGAGCACCTGACCAATCATGTTCGGATACATACTGGTGAAACGCCGTTCAGGTGCAGCTACTGTCCGAAGGCGTTCACCAAGAAAGATCACCTGGTGAACCATGTTAGACAACATACGGGAGAAACGCCACATAAATGCACGTACTGTTCAAAATCTTTCACTAGAAAGGAGCATTTGACCAATCATGTGAGACAACATACTGGGGAGTCACCTTATAGATGTCATTACTGTTCAAAGTCGTTTACTAGAAAAGAGCATCTGACCAATCATGTCCGGATACATACCGGGGAGTCTCCTCACCGTTGTGAATTTTGCCAAAAAACGTTCACCCGTAAAGAGCACCTTACCAATCACCTTCGTCAACACACTGGCGAGACGCCGCATTGTTGCAACGTATGCCAGAAACCGTTCACAAGGAAAGAACACCTGGTGAATCACATGAGGTCACACACCGGCGAGAGACCCTTCGCTTGTGGAGAGTGCGGCAAGGCATTTCCTCTGAAAGGCAATTTGCTCTTCCACCAGAGGTCGCATAACAAAGGGGCCACAGCGGAAAGGCCGTTCAGATGTGATCTGTGTGAAAAAGACTTCATGTGTAAAGGTCACTTGGTATCTCACAGGAGATCCCACATCGGTGAAAGGCCTCACGCTTGTCCTGACTGCGGGAAGACTTTCGTAGAGAAAGGGAATATGCTCAGGCATATGAGAAAGCATACAGAAAACGGACAGGGTCAACCATCGCAAGCGCCCAATCCTGTGCAACCCGGTCAGCCTCAGCAGCCCCCGCCACAGAATCAGGTGGCCCCGCAGCCTCAGAACAATCCGCCGAATAACGGCAACATACAGATACCTCAGGTGCCGGTTGTGAGCCAGCCTCAACCCCAACCTCAGCCTTCCGTAGTACAGTCTCCTCACATCCAAATGCACCAGACGGCACCGCATCCGGTTGTTGTACCAACGGCAAACGGCAACGTTCTCACATCCTATTAG
Protein Sequence
MNSDNQAVLSGHNSANSENSSQRPPPTTSVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGTSRDNQGKIPQDAAMLSQHGILPTDPSLLLQQHAQIPVSISTSQGNISIPAGAIQLEGAHINQHQNEAMAAQNQMSRDIRMAHTQQQAAQQGQQHQQQQQQPPQQQQQHGGQQPQQQNMVQVQLQAAQLQMSGENQLSQQQALTVQQLQQLQVQQVLDNVVRFENTLETNQNQSNNQAFLVQFEKALQNYRPVISGALSGLQDLKANMMDVRTADGSIVKIQTNIQEQELVKTLGVDIVQNMYKVNVDDLNHLLAYHEIFGKLQGNQGEVSNNNQNVQTSTNNNNNNNINLQQNTPSLAIIAKDEQEASTSNVTSDSNNSVGTHVCDLCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELTKHGKCHLGGSMFTCAICFHVFANDASLERHMKRHSTDKPYGCSICGKSFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLSNHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCAKSFTRKEHLINHVRQHTGETPFRCNYCPKAFTRKDHLVNHVRQHTGESPHKCPYCTKSFTRKEHLNNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGETPFRCSYCPKAFTKKDHLVNHVRQHTGETPHKCTYCSKSFTRKEHLNNHVRQHTGESPYRCHYCSKSFTRKEHLTNHVRIHTGETPFRCSYCPKAFTKKDHLVNHVRQHTGETPHKCTYCSKSFTRKEHLTNHVRQHTGESPYRCHYCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCQKPFTRKEHLVNHMRSHTGERPFACGECGKAFPLKGNLLFHQRSHNKGATAERPFRCDLCEKDFMCKGHLVSHRRSHIGERPHACPDCGKTFVEKGNMLRHMRKHTENGQGQPSQAPNPVQPGQPQQPPPQNQVAPQPQNNPPNNGNIQIPQVPVVSQPQPQPQPSVVQSPHIQMHQTAPHPVVVPTANGNVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00260812;
90% Identity
iTF_00260812;
80% Identity
-