Cmac008401.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010007597.1:561187-563817[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-09 2.4e-06 27.2 0.3 2 42 15 55 14 59 0.86 2 2 4.4 2.7e+03 -1.7 0.0 18 28 293 303 293 303 0.90
Sequence Information
- Coding Sequence
- ATGGCACGCTATAAATCTAAAGGGATTAGAGGTAATTGGTCAGAAGCATCCATGAAACAAGCATTAACTGCAATCAAAAGCGGTAGCATGAAAGTATATACGGCTGCAAAGCACTATAATGTGCCAAGACGTACTTTAAGGCGTTATTTACTAGAGAAAAAGGAGACAAAATCTACATTGGGTCGAAAACCGCTCCTTAACTCTGAACAAGAGAAGATTTTAGCATCCCGTATTATTCGCCTGTGCAACGTGGGATACCCATTGACACAACGCGCACTACGTAGATGCGTAAAGACATTCTGTGATCGAAATAACATTTCAGCGTCAGATGGAGACTCGATGGTGGGGCGAGATTGGCTAAGAGGATTTTTGAAACGTCATAGAAATATCAGCAAGCGAAAGGCACAACACCTGAATCCCGCAAGGGCGCAAAAGTTGAATAAAACCgttgtttctgattattttgctaaattgaaaaaaatcttaGAAGATAATGACATTATGAATAAACCGGAACGCATATTCAACATTGACGAAAAAGGTTGCCAACTTACATTGCACAAATCACCAGAAGTTTTGGCTGAACGTGGATCCAAGAGGGTACATTTAGTAGCATCAGAACACGGTGAGAATGTTACAATAGTTTCATGTGGCAATGCCTTAGGTCATGCGATTCCGCCTATGATTCTCTTTAAAGGCAAACGCATGAAGCCAGAATGGATAGATTCCTTACCAACCAGCTCAATAGCCCAAATGACACCCAAAGGGAGCATGAACTCTGAAACGTTTGTAAGCTGGATGCATCATTTCTCCAAATTCAAATTGCCCGGACCTTGTTTACTTATCTTTGATGGAGCCAAATGCCACCTGGACTATTCGATTGTTGAAGCAGCAGAAAAATTTGACATCAAGCCTTTCTGTCTTCCTAGTAACACCACGCATGAATTACAACCGATGGACAAAGCGGTATTTCGATCCTTTGAATATTACTGGGACGAGGAAGTCTTAAAGTATTGGTCACTACACGAAGAcaggaaaataacaaaacaacGTTTTGGGATATTATTTTCCAAAGCGTGGGATAAAGCTGCTACACCTGCTAATATCAAATCAGGATTTGAAGCCACCGGAATTTTCCCATTTAATCCTGAAAGGATACCGGAAGAGGTATACGCTCCTAGCATACCTACCTTTGATTCAACAATACCTAGACCGTctcaaaatgaagaaaataatgATTCGAATGATAGCGATAATACTAGTGAAAATCTGTCGATTCCTCCTCAAGAAAATGACGATCCCATTGAAAGCAACGATACTGTTGCTGGCAAAAATCTGGTCATTCTTGCTCAAGTAAATGATAATCCCAATGACAGCACCGCTATTGATTTCAGTGGAAATCATTTCATCCCTGTTGAAAACCCGATGCCTATACTGCATCCAGATCAAAATGATTCCCAGACAAGTGAGCGTATATTGCCAAATACTGCAAATCGTTCTGATAATAATTCAAAGCATCCAACTCAAGTAGATAGATCGAAATTCATAGAACCCCAGCCAAGTGTTTATGACGATTTCGATAGTAGCGATGAGATTCCTTTATCCAAGCTAAAACAGCACAAGAATAATAGAGACCTGAAAACTGAATCAAAAGTCTGCTCCACTACACTTAATGAGTCATATTCATCTTTTTGTGGAATTTTAAAAACCCCGGAGAAGACGTCAAGTCCAAAAACTAAAGCTAGAGCAAAAGCTATCAATAGTCTGGCACAGGAGCTAACAAAATCaatgtttaaagaaaaaaacaataagCCAGAACCATCCAAtgcaagtaaacaaaaaattgagaATAAACCAGGTCCATCTAGAGTCTCTTCtcaaaaaaggaaacaatattCTCCTGAAATGAACAAGACTACAGCAGTCACTTCTAAGGTTTCTAATCAAAAAGGCAAAGGGCattctaaaaaatctaaaaactccTGGTATTGCTACGTTTGCGGTGAGGATAGAATAGCAGATATGAGACTATGCTTTTTATGTCAAACGTACGTCCATGAAGAGTGTGTTGGTTTAACAAAAAGAGACACAGATAAATTTGTTTGCACTCTGTGCAGTCAggactaa
- Protein Sequence
- MARYKSKGIRGNWSEASMKQALTAIKSGSMKVYTAAKHYNVPRRTLRRYLLEKKETKSTLGRKPLLNSEQEKILASRIIRLCNVGYPLTQRALRRCVKTFCDRNNISASDGDSMVGRDWLRGFLKRHRNISKRKAQHLNPARAQKLNKTVVSDYFAKLKKILEDNDIMNKPERIFNIDEKGCQLTLHKSPEVLAERGSKRVHLVASEHGENVTIVSCGNALGHAIPPMILFKGKRMKPEWIDSLPTSSIAQMTPKGSMNSETFVSWMHHFSKFKLPGPCLLIFDGAKCHLDYSIVEAAEKFDIKPFCLPSNTTHELQPMDKAVFRSFEYYWDEEVLKYWSLHEDRKITKQRFGILFSKAWDKAATPANIKSGFEATGIFPFNPERIPEEVYAPSIPTFDSTIPRPSQNEENNDSNDSDNTSENLSIPPQENDDPIESNDTVAGKNLVILAQVNDNPNDSTAIDFSGNHFIPVENPMPILHPDQNDSQTSERILPNTANRSDNNSKHPTQVDRSKFIEPQPSVYDDFDSSDEIPLSKLKQHKNNRDLKTESKVCSTTLNESYSSFCGILKTPEKTSSPKTKARAKAINSLAQELTKSMFKEKNNKPEPSNASKQKIENKPGPSRVSSQKRKQYSPEMNKTTAVTSKVSNQKGKGHSKKSKNSWYCYVCGEDRIADMRLCFLCQTYVHEECVGLTKRDTDKFVCTLCSQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357387;
- 90% Identity
- iTF_00260546;
- 80% Identity
- -