Cvom006286.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- -
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000135.1:149503-153313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.029 1.4 9.7 0.1 2 23 233 255 232 255 0.91 2 10 0.45 22 6.0 0.0 6 23 264 281 264 281 0.96 3 10 0.00022 0.011 16.4 0.4 1 23 287 310 287 310 0.96 4 10 0.00035 0.017 15.8 5.0 1 23 320 342 320 342 0.99 5 10 7.6e-06 0.00037 21.0 2.3 2 23 349 371 348 371 0.94 6 10 0.0012 0.058 14.1 2.4 1 19 377 395 377 399 0.94 7 10 0.29 14 6.5 0.5 2 23 408 429 407 429 0.96 8 10 0.0018 0.09 13.5 0.6 3 23 436 457 435 457 0.89 9 10 3.1e-06 0.00015 22.2 0.6 2 23 464 485 463 485 0.96 10 10 1.3e-05 0.00062 20.3 1.7 1 23 491 514 491 514 0.98
Sequence Information
- Coding Sequence
- ATGATTTGTCGTTTATGTTTAAAAGACATTCCAAAAGAATCTAGTATTAAATTGTACGAAAATTTAGACACATCCGACGATTCAATAGAAATGGTCAAACTCATTGAAAAGTATCTGGAAATCGAAATTAAACATAATGACATTGTTTCCACTATTATATGCCAAGATTGCTATGATCACTTGGAAGAGTTTCATCGATTTTCGCAACAAGTGGCCGAGAAACAACTAACACTGCGTAATGAGTTTTTGGATGTGAATCTTAAGAAAGAATTCAATTTTGATGACAATGACGATGCTTGGGACAATGATGATCATGAAGACAAAATTGATCCAAAAGAAACCACACAAGAGATGACCATAAACTGCCCAATAAGTATGTTTAAGGATGAATCAGACGATTATGAAAAGGATGAGCAGGAAATGCCCACTGAGGATTTAATGGATACAGTTGTATGTAACAATGAGAAAGATATTATAGCACCAGATAGTGTTGCTGTCAATGATGATGATTATATACCTGCTCAAATTTCCTCAGATGATGATGATGTTCCATTGATAAAACTAAAATCCACTAAGAAAACTTCACAAAAGAAGAAACGTAAGAAAGCGCCAGCAAAACCTCGCGAGATCAAAGAAAAGAAGCCGGCTAAAAAGAAATTATCTGCACAAGATGAAGTGGCCATGTCAATAGATCTAGTATGTGATATTTGTCAAACACGTGTAGAAACATGGAAAGCTTTAAGGGAACATTTCCTGCTGGCACACACTAAAACTCCATATATTAAGTGTTGTGACATTGTTTATCGTAAACCACGAGAACTTATTGAACATCTTGAGTGGCATAAAAACCCTGATATGTTTAGATGTCAAATTTGTGATAAAAACATGTCTAGCGCCCGAAATTTAACCATACATATTACATCAGAACATCCCGATGAAGCTGACTCAGTAGAATTCTACGAGTGTGAACATTGTTCCAAACGTATACGCAATTATAATTTATTCAAAAAGCATATGCGGTCCCACAACAAAGATCAGGAAGTTGAATGTCATATTTGCAATAAAAGATTTCCATCAGAATACCATTTAGAACGTCATATCAGTAACTATCATAAGAAAGTTCCTCTTCATGTCTGTGATATTTGTGGACGTATATATAAAACTAAAGCTGCATTTAAACGTCACTGTGATGAGCATCAAGGTATTGTTTCTCAGGCTGTACAATGTTCGATATGCAGTACATGGCTTAAGAATGAAGATAGCTTACGTTTACATCGTTTCACACATGAGGAACATCCAGCGCCGTGTGATATTTGTGGGAAATTGTTCAAAACAAGTCGCAGACTATATAGACACAAAGTATATTGGCATAGATTGGATACAAATTTACAATGTAGTTTTTGCGATAAAGTGTTCCGTCAAAAACGCAATCTTGATGAACATATGGCCATACATACCGGAGTTCAACTATATACATGCCCGCATTGCGGCAAAGACTCACGTTCGAGATCTAACATGTATGTTCACATTAAAAGAATACATCCAGATGAATGGTGGAAATCAAAAATGGAACGTCTGAACTTAATACCTAAAGATAATCAGTCTGACGAGGGTCAACAGTGA
- Protein Sequence
- MICRLCLKDIPKESSIKLYENLDTSDDSIEMVKLIEKYLEIEIKHNDIVSTIICQDCYDHLEEFHRFSQQVAEKQLTLRNEFLDVNLKKEFNFDDNDDAWDNDDHEDKIDPKETTQEMTINCPISMFKDESDDYEKDEQEMPTEDLMDTVVCNNEKDIIAPDSVAVNDDDYIPAQISSDDDDVPLIKLKSTKKTSQKKKRKKAPAKPREIKEKKPAKKKLSAQDEVAMSIDLVCDICQTRVETWKALREHFLLAHTKTPYIKCCDIVYRKPRELIEHLEWHKNPDMFRCQICDKNMSSARNLTIHITSEHPDEADSVEFYECEHCSKRIRNYNLFKKHMRSHNKDQEVECHICNKRFPSEYHLERHISNYHKKVPLHVCDICGRIYKTKAAFKRHCDEHQGIVSQAVQCSICSTWLKNEDSLRLHRFTHEEHPAPCDICGKLFKTSRRLYRHKVYWHRLDTNLQCSFCDKVFRQKRNLDEHMAIHTGVQLYTCPHCGKDSRSRSNMYVHIKRIHPDEWWKSKMERLNLIPKDNQSDEGQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00922330;
- 90% Identity
- iTF_00259126; iTF_00045531;
- 80% Identity
- -