Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000340.1:818420-821910[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.5 1.2e+02 3.6 0.2 1 15 138 152 138 155 0.84

2 12 0.27 13 6.7 0.4 1 19 230 248 230 248 0.89

3 12 0.00014 0.0069 17.0 4.1 1 23 277 299 277 299 0.98

4 12 8.1e-06 0.0004 20.9 0.2 2 23 318 339 317 339 0.97

5 12 0.00072 0.035 14.8 1.1 1 23 365 386 365 386 0.96

6 12 0.00017 0.0084 16.7 0.5 1 23 392 414 392 414 0.98

7 12 5.3e-05 0.0026 18.3 1.2 1 23 457 479 457 479 0.96

8 12 1.2e-07 5.7e-06 26.7 0.7 1 23 485 507 485 507 0.99

9 12 0.00015 0.0072 16.9 3.5 1 23 513 535 513 535 0.99

10 12 1.2e-06 6e-05 23.5 0.6 1 23 541 563 541 563 0.98

11 12 1.5e-05 0.00076 20.0 0.6 1 23 567 589 567 589 0.98

12 12 0.21 10 7.0 0.2 2 23 602 624 602 624 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.5	1.2e+02	3.6	0.2	1	15	138	152	138	155	0.84
2	12	0.27	13	6.7	0.4	1	19	230	248	230	248	0.89
3	12	0.00014	0.0069	17.0	4.1	1	23	277	299	277	299	0.98
4	12	8.1e-06	0.0004	20.9	0.2	2	23	318	339	317	339	0.97
5	12	0.00072	0.035	14.8	1.1	1	23	365	386	365	386	0.96
6	12	0.00017	0.0084	16.7	0.5	1	23	392	414	392	414	0.98
7	12	5.3e-05	0.0026	18.3	1.2	1	23	457	479	457	479	0.96
8	12	1.2e-07	5.7e-06	26.7	0.7	1	23	485	507	485	507	0.99
9	12	0.00015	0.0072	16.9	3.5	1	23	513	535	513	535	0.99
10	12	1.2e-06	6e-05	23.5	0.6	1	23	541	563	541	563	0.98
11	12	1.5e-05	0.00076	20.0	0.6	1	23	567	589	567	589	0.98
12	12	0.21	10	7.0	0.2	2	23	602	624	602	624	0.91

Sequence Information

Coding Sequence: ATGTCCTACGGGCGACAAACAAAATATACTACAACATTTCTTCAATTGGTTTTCACAGAGGAAACGGTCGATTTAATAGAAGAATCTAACGATGAAATGGAAAGTTGGTTATATTATACCCAGGAAAATAAAACGGAAGATAGCAGTGATATAAATAGTCTTAATGATGTAGATGCAGAACAACAATTAATTTATATAGACTCTACGGACCTAGTAACAAATAATAATGAGCAAGCTTTTCAATATAATGATGAGGAAAATGAACTAATACATAATGAAGTTGATGATCAAGATCTGCAAGATAATGCTGATGTGAATGAAGAAGAACCACTAGATAATGTAGATGACTTATCAAAGCATAACTTAATTTTAAGAGAAACTATTGATGAAAATGGTCAGCTGGTGGAGGGTTATTTTTGCCAACAGTGCAATTTAGCATTTAACACCATCGAAGATTTTTTGAGCTATCATCCCTGCATGGAACTACTAAATGAAATTCCCGAACAACAAGAACAGGATACAGTGCCATCTGCTCCAGAAGATAAATTATGGGATTTAGTAGAAAATTTAGAAGAGGCAGAAGATGATAATGATGCCTTTGATGAAATTATCGAAATTAAACCAAATGTAGATAGTCTACACGAAAATGAAGTAGCCAGCAGTGCTGTTGAGTTGGATAAGGAACGTTATTTCTGCTACGATTGCCAACAAGTATTTACCGACTTAACTACAGCTGAAAATCATGATTGTATCAATCAATTGCCAAATTCTGAAGAATTGACAGAGCCAAAGTCTACTTTACTTGTAGATAATGCGGTAAATAATGTTTACAGATGCCATTTATGCGATAAAGACTATACGTCTTTACGATCCTTCAACAATCATCAACGTTGGCATAAGAAATCTGAAGAATTATTGGGTCACACCAAGACATTGCATGATGTAGCTGTAGTCTGTGATGTTTGTAATACGGTATTTGCATCGGAAAAGAATTTAAAATTACACATGAAGATGCATAAAAAGCAAACCGTTAAAACCATACAGGAGGCATTACCAGTTGGTGCACAAAATGAATACAATGAATTAAATCAATTCTTTTGTGAAATTTGTAATAAAAGTTTCGATCAAAAACTTTTGGTCATCCATAAGAATATGCATCAAAATCTGGAGGAATATAATTGCGGGAAATGTAATAAACAATTTGAAAACTTACCAAGTTATGAAATACACATGCAGATGCATGTTGACAATATAACGAATGTTAAGAAATTTGCTACGGTTAAGAAATTCAATGATTTTATAATTACGGAAGATGTGCCATCTACCTCGGCCCAAGGCAGCTCTAAAGATGCAGGTGGTAAACGTAAGCATGCCTGTCAATATTGTGGCAAAGAGTTTTCACGTCCCTATGAGAAAGTTAAACATGAACGTGTACATACAGGAGAGAAACCGTACGAATGTGAAGTGTGTGGCAAGACCTTCAGGGTTTCCTATTCCTTAACTTTACATTTGAGAACCCACACCGATATACGGCCCTATGTGTGTGCCACCTGTAATAAACGCTTCAAACAGCAATCCGTTTATGTGCATCACCTTAAGACCCATGTCGTTGAGCGCGGCTATAAGTGTGATATTTGCGGTAAAAGTTTTCGCACTTCTGTGCAATTAAGTGGCCATAAAAATATACACAGTAAACCCTACAATTGCACCGAATGTAATCGTCCCTTTGCTTCGTTATACTCTGTAAAAATTCACATGAAAACCCACAATAAATGCCACAAATCCAATAAAAATCTCAAAAATCGCTGTAGTATATGTGGTGCCTCCTATGCCCGTATATTTGCTTTACGTTTTCACCTAAAGGAACAACATGGTCTCGATGTACATCCCACACAATTGTTAGCAGCGACCAGTAGTTCGAATGTAAATACGCACAAGGAAATGGATGTTGAAACAGCCATACTAATGAATGCCGCCCATGAGGCTAGCAATCAACAAATGCATTTTATAAATGCCGATGAGGAAGACAATGAAGGTGATGATGATGAGGACCATGATAATGGGGATGAGAGGATATTTAGTAATCAAGTGGATCATGAGGAAAATATACAAAATCCTGCTTTGACGCCTAATAGTTATTTGGATGAAACTGAGGCGGCTACCCAGGCCATATTAAATACACAAGAGATTTCTGTTGATCATTTTCCTACCGAAGAAATTATAACCGATTGGTTATCCAAATAG
Protein Sequence: MSYGRQTKYTTTFLQLVFTEETVDLIEESNDEMESWLYYTQENKTEDSSDINSLNDVDAEQQLIYIDSTDLVTNNNEQAFQYNDEENELIHNEVDDQDLQDNADVNEEEPLDNVDDLSKHNLILRETIDENGQLVEGYFCQQCNLAFNTIEDFLSYHPCMELLNEIPEQQEQDTVPSAPEDKLWDLVENLEEAEDDNDAFDEIIEIKPNVDSLHENEVASSAVELDKERYFCYDCQQVFTDLTTAENHDCINQLPNSEELTEPKSTLLVDNAVNNVYRCHLCDKDYTSLRSFNNHQRWHKKSEELLGHTKTLHDVAVVCDVCNTVFASEKNLKLHMKMHKKQTVKTIQEALPVGAQNEYNELNQFFCEICNKSFDQKLLVIHKNMHQNLEEYNCGKCNKQFENLPSYEIHMQMHVDNITNVKKFATVKKFNDFIITEDVPSTSAQGSSKDAGGKRKHACQYCGKEFSRPYEKVKHERVHTGEKPYECEVCGKTFRVSYSLTLHLRTHTDIRPYVCATCNKRFKQQSVYVHHLKTHVVERGYKCDICGKSFRTSVQLSGHKNIHSKPYNCTECNRPFASLYSVKIHMKTHNKCHKSNKNLKNRCSICGASYARIFALRFHLKEQHGLDVHPTQLLAATSSSNVNTHKEMDVETAILMNAAHEASNQQMHFINADEEDNEGDDDEDHDNGDERIFSNQVDHEENIQNPALTPNSYLDETEAATQAILNTQEISVDHFPTEEIITDWLSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00200072; iTF_00259086; iTF_00045487;
90% Identity: iTF_00259086; iTF_00045487;
80% Identity: -