Bbay024453.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- -
- Assembly
- GCA_950370525.1
- Location
- OX493268.1:17490440-17493047[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3 1.9e+02 3.7 0.2 1 15 109 123 109 126 0.83 2 12 0.25 20 6.7 0.4 1 19 209 227 209 227 0.89 3 12 0.00017 0.014 16.6 3.9 1 23 256 278 256 278 0.98 4 12 2.8e-05 0.0023 19.1 0.3 2 23 297 318 297 318 0.97 5 12 0.00066 0.054 14.8 1.1 1 23 344 365 344 365 0.96 6 12 0.00016 0.013 16.8 0.5 1 23 371 393 371 393 0.98 7 12 5.2e-05 0.0042 18.3 1.3 1 23 436 458 436 458 0.96 8 12 1.1e-07 8.7e-06 26.7 0.7 1 23 464 486 464 486 0.99 9 12 0.00013 0.011 17.0 3.5 1 23 492 514 492 514 0.99 10 12 2e-06 0.00016 22.7 0.6 1 23 520 542 520 542 0.98 11 12 1.4e-05 0.0011 20.1 0.6 1 23 546 568 546 568 0.98 12 12 0.19 16 7.0 0.2 2 23 581 603 581 603 0.91
Sequence Information
- Coding Sequence
- ATGGCTGAGGAAACGGTCGATTTAATAGAGGAGTCTAACGATGAAATGGACAACTGGTTATATTATACTAAGGATAGTAAAACGGAAGAAAGCAGTGATATAAATACTTACAATGATGTAGATGCAGAACAACacttattttatatagaatctACGGAACTAGTGACAAATGATGATGAACAAGCTATTCAATATGAGGTTGAAAATAATGAACTActaaataatgtaaatgaagAGGAACCACTAGATAATATAGATGATTTATCAAAACACAACCTCATTTTAAGAGAAACTATTGATGAAAATGGTCAGCTGGTGGAGGGTTATTTTTGCCAACAGTGCAATTTAGCATTTAACACCATTGCAGATTTTCTGAACTATCATCCCTGCATTGAACTACTAAGTGAAATTCCCGAACAACAAGAGCAAGATCAACAACAGGATACAATGCCTCCAGAGCCTGAGGATAAATTATGGGATTTGGTAGAAAATTTAGATGAGGCAGTAGATAATAATGATGCCTTTGAGGAAATTATCGAAATGAAACCAAATGTATCACAGCATCTTGAAATTGTTCAGGAAAAAGAATTAGCCAGCAGTGCCGTCGAGTTGGATAAGGAACGATATTTTTGCTACGATTGCCAACAAGTATTTACCGACTTAACTACAGCTGAAAATCATGATTGTATCAATCAATTGCCAAATACGGATGAAGTGACCGAGccaAAGTCTACTTTACTTGTAGATAATGTAGAGCAAACTGTTTACCGATGTCATTTATGTGATAAAGACTATACATCTTTGCGATCCTACAATAATCATCAACGTTGGCATAAGAAATCTGAAGAATTATTGGGTCACACTAAGACCCTACATGATGTAGCTGCAGTCTGTGATGTATGTAATACGATATTTGCATCGGAAAAGAAtttaaaATTACACATGAAGATGCATAAAAAGCAAGCAGTGAAAACCATACAGGAGGCATTACCAGTTGGCGCACAAAATGAATACAATGAATTGAATCAGTTCTTTTgtgaaatatgcaataaaaGtttcgaTCAAAAACTTTTGGTCATCCATAAAAATATGCATCAGAATCTGGAGGAATATAATTGTGGCAAATgtaataaacaatttgaaaacttgCCAAGCTATGAAATACACATGCAGATGCATGTTGATAATATAACGAATGGTAAGAGATTATCTACAGCTAAGAAATTCAATGATTTTATTCTAACGGAAGATGCGCCATCTACCTCGGCTCAAGGCGTTAACTCTAATGATGGTGGTAAACGTAAACACGCATGTCAATATTGCGGCAAAGAGTTTTCTCGTCCTTATGAAAAAGTTAAACATGAACGTATACATACTGGTGAAAAACCCTATGAATGTGAAGTGTGTGGCAAGACATTTAGAGTGTCATATTCCCTAACATTGCATTTGAGAACCCACACTGATATAAGACCCTATGTGTGTGCCACCTGTAATAAACGCTTCAAGCAACAATCCGTTTATGTGCATCACCTAAAGACCCATGTCGTTGAGCGCGGCTATAAGTGTGATGTTTGCGGTAAAAGTTTTCGCACTTCTGTGCAACTAAGTGGCCATAAAAATATCCATAGTAAACCCTATAATTGCACCGAATGTAATCGTCCATTTGCATCTTTATATTCGGTCAAAATACACATGAAAACCCACAATAAATGCCACAAATCCaataaaaatctcaaaaatcgCTGTAGTATTTGTGGTGCCTCCTATGCCCGCATATTTGCTTTACGTTTTCATCTTAAGGAACAACATGGCCTCGATATACATCCCACACAACTGTTACCAGGGACTAGTTCGAGTGTTAATACGCACAAGGAAATGGATGTTGAAACGGCCATACTAATGAATGCCGCCCATGAAGCTAGCAATCAAGAAATGCATTTTACAAATGCTGAAGAGGAAGAAGATAATGAAGATGATGTTAATAATGATGAAGACAATGACAGTGGGCATGAGAGGATATTTAGCAATCAAGTAGATCATGtggaaaatatacaaaattctgcTTTAACACATACTAGTTATTTAGATGAAACTGAGGCAGCTACACAAGCCATATTAAATACACAAGAGatTTCTGTTGATAATTTCCCTACCGAAGAAATTATCACCGATTGGTTATCCAAATag
- Protein Sequence
- MAEETVDLIEESNDEMDNWLYYTKDSKTEESSDINTYNDVDAEQHLFYIESTELVTNDDEQAIQYEVENNELLNNVNEEEPLDNIDDLSKHNLILRETIDENGQLVEGYFCQQCNLAFNTIADFLNYHPCIELLSEIPEQQEQDQQQDTMPPEPEDKLWDLVENLDEAVDNNDAFEEIIEMKPNVSQHLEIVQEKELASSAVELDKERYFCYDCQQVFTDLTTAENHDCINQLPNTDEVTEPKSTLLVDNVEQTVYRCHLCDKDYTSLRSYNNHQRWHKKSEELLGHTKTLHDVAAVCDVCNTIFASEKNLKLHMKMHKKQAVKTIQEALPVGAQNEYNELNQFFCEICNKSFDQKLLVIHKNMHQNLEEYNCGKCNKQFENLPSYEIHMQMHVDNITNGKRLSTAKKFNDFILTEDAPSTSAQGVNSNDGGKRKHACQYCGKEFSRPYEKVKHERIHTGEKPYECEVCGKTFRVSYSLTLHLRTHTDIRPYVCATCNKRFKQQSVYVHHLKTHVVERGYKCDVCGKSFRTSVQLSGHKNIHSKPYNCTECNRPFASLYSVKIHMKTHNKCHKSNKNLKNRCSICGASYARIFALRFHLKEQHGLDIHPTQLLPGTSSSVNTHKEMDVETAILMNAAHEASNQEMHFTNAEEEEDNEDDVNNDEDNDSGHERIFSNQVDHVENIQNSALTHTSYLDETEAATQAILNTQEISVDNFPTEEIITDWLSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259958;
- 90% Identity
- -
- 80% Identity
- -