Cvom016490.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vomitoria
Gene Symbol
-
Assembly
GCA_942486075.2
Location
CALNXM020000555.1:114827-117710[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0031 0.15 12.8 3.2 1 23 181 203 181 203 0.98
2 15 0.00041 0.02 15.5 4.1 1 21 209 229 209 230 0.92
3 15 0.88 43 5.0 6.1 1 21 289 309 289 310 0.94
4 15 1.7e-05 0.00084 19.9 1.4 2 23 320 342 319 342 0.94
5 15 0.00044 0.022 15.4 0.8 1 23 430 452 430 452 0.97
6 15 0.0061 0.3 11.8 3.2 1 23 458 480 458 481 0.95
7 15 0.0059 0.29 11.9 0.3 1 23 502 525 502 525 0.96
8 15 1.3e-05 0.00063 20.3 2.6 1 23 531 553 531 553 0.98
9 15 2.5e-06 0.00012 22.5 2.4 1 23 559 581 559 581 0.99
10 15 1.5e-07 7.4e-06 26.4 1.8 1 23 587 609 587 609 0.96
11 15 0.0097 0.48 11.2 4.1 1 23 615 637 615 637 0.97
12 15 0.0012 0.057 14.1 2.2 1 23 643 665 643 665 0.96
13 15 7.7e-07 3.8e-05 24.1 0.4 1 23 671 693 671 693 0.99
14 15 1.8e-06 9e-05 22.9 1.7 1 23 699 721 699 721 0.99
15 15 0.01 0.5 11.1 0.1 1 19 727 745 727 746 0.97

Sequence Information

Coding Sequence
ATGTTAATACTTGAAATATATGGACGGGTGTGTCGAGTGTGCATGTGTAAATCGAATAATTTGCATGACTTAAATGACACCACCGAAGAGTGTCTCACCATGAATGAAATGTTAACAAAAACTGTCTCCGGCATACATGCCAACATCGAATTTCCAGTGCCTCAAGAAATTTGTGATCTATGCATGGAGCATTTACAGATTTCCTATAGATTCCAACAACTATGTATGAACACCAATGAGCAGATGCTGAAAATCTGGGAACAGTCCCAAAAGGCAGAAGTTAAACAGCAATCATTAACGGGAGAAGTGGAGAATGAAGACGAACCAGATCCCATTAAAGTTGAATATGATATGGTGGAAGGTGAAGAGCAAAAATTTGATAATGTGGACATTTTAGAGGATTTCGAAAATGTGGAAAATGGCAATAAGTGGGAAAATGATACGGATGATGAAGCACCGGATAAAGATGAATTGGCCTGCCAAGACACTTGTTTAAAATCAGCCTCTTCAACTGCATCTGGTCGACCTTCTGCTGGTAGGTTTCCTTGTCTAGAATGTAAGGAAACATTTGCAAAACATTCTATATTGAAACGTCATCGTCGTAAACATGAGTCAACACATCCCTTTGACTGTCACAAGTGTACACAACGTTTCAAAACGAAAAGTCTATTGCAAAAACATTCGAAAAGCTGTAAAAAAGACAAGAAAAATGTGGTCATTAAAAGCGATAGTGAGGATGAAGATGACGATGAGGATATGCCTTTAAGTTCTTTAAAGAAAACCGAAACTGATAATGAAAGTGATGTCTCCAAGGAAAATAATAAGAAGAAACGAAAATCTGTAAAAGTTGACAAAAAGACTCCCTATCATTGCTCCAAATGCGATAGCTATTTTAAATACGGCTATCAGCTTACAAAACATCGTTGTAGTGAAGAGGATAATGATTCGCATTTGAATAAATGCGAAATATGTAGCAAGACATTTACCACAGAGAATATGTTGCAAAAACATATGAGTGGCAAACATAAAGACAACAAAACCACAAGCAAGACAGAGAAAAAGACTTCAGACAAAAGTAAAGCCTCTAACAACAGCGATAATGATGATGGCAATGGTGATGACCGACCTGATGGCCAGATTGAAGAAGTCGATATGGATCAAGACAATGACAATGATGATAATTGGAATGATGCGAATCAGGGCGATTCATCGGATGACAGTGATTCAGATTATGCTGAAAAGGAGAAAACTACAACAAAGGCCAAACCAGAGCCGGCGGCAAATCAATTTAAATGTATTGAATGTGATGCCGCGTTCAGATTTGAAAAACAACTCGCCCGTCATATGAAAAAACACACAGAAGCCCATCGTTTTGTGTGTGCTCTGTGTTGGGATCGTTTCAAGTATCCACATATGTTGCAGAAACACATGGAAAAACATCATCCCGAAGATAATCCCAATCCCAAAGTGGCGGAGGCAAAACCGGAAAATGTAGAAAAGACACATGTTTGCAGTTACTGTCCATCGGCCTACTCAAATGTGGGTGGCTTGGCCCAACACATGAGTAAGAAACATCCGGAAATTAAGCCCTTCAAATGTGACAAATGCGACAAGACTTTTGTGGTAGAGGAACATTTGAAAATACACACCAATCGTCATATGGGTATTAAAAACTTTAAATGTGATCTGTGTGATAAATCTTTTTCGTTTAAGTTTGCCATGAAACAGCATATGCGCATACATACGGGAGATTTGAATTACTTATGCACCTTATGTGGCAAGAAATTCTATAGACCTAGTAATTTACGCCAACACATGCAACGTCACGGTGATGATAAACCCTACACATGTCCTCACTGTCCAAAACGTTTTAAATGTCCTTCGGATCGTTATATACATTTAATGTCACATCAAGAGGGAAAAAATCATGTATGTCAGACTTGTGGTGCAAGGTTTTCTCGAGTGGATACTTTACATCAGCATCAAATTTTGCACACGGGTGAAAAACGCTATAAATGCGATCAATGTCCTATGGCATTCCCCCGTTTAATGAATTTAAATCGTCATTTACGCACTCATACAGGTGAGAAACCCTATAAATGTAAATTTTGTGAAAAAGCTTATGCACAAAGTAATGATTTGAACAAACATTTACGCACCCATGTGGGTGAGAACACTTATATGTGTACCCAGTGTCCGGCCGCCTATAAATATCAGGCGGACTTAAGGAATCATGAATGGGAACATTATCGCTTACAAAAGGAGGCTGAACAGAAAGCTAAAGATGAAGCGTCCGCCTTAAAAATGAAAGAGGAACAAACTGTTATGGAAGTAAATGTATAA
Protein Sequence
MLILEIYGRVCRVCMCKSNNLHDLNDTTEECLTMNEMLTKTVSGIHANIEFPVPQEICDLCMEHLQISYRFQQLCMNTNEQMLKIWEQSQKAEVKQQSLTGEVENEDEPDPIKVEYDMVEGEEQKFDNVDILEDFENVENGNKWENDTDDEAPDKDELACQDTCLKSASSTASGRPSAGRFPCLECKETFAKHSILKRHRRKHESTHPFDCHKCTQRFKTKSLLQKHSKSCKKDKKNVVIKSDSEDEDDDEDMPLSSLKKTETDNESDVSKENNKKKRKSVKVDKKTPYHCSKCDSYFKYGYQLTKHRCSEEDNDSHLNKCEICSKTFTTENMLQKHMSGKHKDNKTTSKTEKKTSDKSKASNNSDNDDGNGDDRPDGQIEEVDMDQDNDNDDNWNDANQGDSSDDSDSDYAEKEKTTTKAKPEPAANQFKCIECDAAFRFEKQLARHMKKHTEAHRFVCALCWDRFKYPHMLQKHMEKHHPEDNPNPKVAEAKPENVEKTHVCSYCPSAYSNVGGLAQHMSKKHPEIKPFKCDKCDKTFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKFCEKAYAQSNDLNKHLRTHVGENTYMCTQCPAAYKYQADLRNHEWEHYRLQKEAEQKAKDEASALKMKEEQTVMEVNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01259363;
90% Identity
iTF_00045477; iTF_00259074; iTF_00200053;
80% Identity
-