Cvom004970.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- ZIPIC_1
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000107.1:564434-567401[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0095 0.47 11.2 0.7 1 23 203 226 203 226 0.92 2 18 1.6e-05 0.00076 20.0 1.5 1 23 229 251 229 251 0.99 3 18 0.00026 0.013 16.2 0.1 2 23 259 282 258 282 0.95 4 18 0.0005 0.025 15.3 0.2 1 23 288 312 288 312 0.97 5 18 0.0014 0.067 13.9 0.7 3 23 318 338 317 338 0.97 6 18 0.0014 0.071 13.8 0.3 1 23 344 367 344 367 0.93 7 18 0.0013 0.065 13.9 2.7 1 23 373 395 373 395 0.96 8 18 1.3e-06 6.4e-05 23.4 4.2 1 23 401 424 401 424 0.98 9 18 0.022 1.1 10.1 0.1 5 23 489 508 488 508 0.92 10 18 0.00019 0.0094 16.6 0.1 3 23 531 553 529 553 0.93 11 18 3.3e-05 0.0016 19.0 0.3 1 23 559 583 559 583 0.97 12 18 0.13 6.3 7.7 1.3 2 23 588 609 588 609 0.97 13 18 0.0024 0.12 13.1 0.0 1 23 615 637 615 637 0.97 14 18 0.00015 0.0075 16.9 3.3 1 23 643 665 643 665 0.97 15 18 0.0014 0.066 13.9 2.8 1 21 671 691 671 694 0.96 16 18 1.8e-05 0.00088 19.8 1.0 2 23 733 755 732 755 0.97 17 18 0.056 2.8 8.8 2.0 1 23 774 793 774 793 0.80 18 18 0.00018 0.0086 16.7 1.3 1 23 799 822 799 822 0.98
Sequence Information
- Coding Sequence
- ATGTTAAAAGTTGTACCGCCTATCAATGTAAGCCAACAGACGCAAGCCAAATGTGGGGAAATATTTTTCCGCAGTTGTACAGATTTTACAATTTATTGTTGCTTTTGTAATTTCAAATTATTCGTTTTCGAAGACTTTCTCTCGCACGTACAAAATGTGCATTTTGTAAATAATTTACTAAAAACCCAAACAATAACAGAGGTTTGTGAACAACTGATGAAAATAAATGGAGAAACAGAAGTGATCGAACCCAAGAAAGAGCGGGATAGGTTTGGAAGTGATGAATTATATGAGAATGTTGGTACTACATTTGAGGTCGCGTATAAGGACGAGGATACACGTGAAAGTGATGTTTCCTATGACTCTGACGACGATTTTGAAAGTTCAGATAGTAATTTTGAGGACGAGTGTTCTGAAGAGTCTCTTCTGAAGGTGTTACATTTAAAGCCAGAAAAAATACACTGGAAGAGAAGAATTACACAGATTAACACTATAAACGCTGACGAAAGTGCTGAAGGAGATGGGTTACAACTAAATCAGCCTCAAGATGAAGAAAGAAATAAAAGTTCTTCTGATGAATCAGGGAAACAGCGCAAAGAAAAAAAATTTGCCTGTAAGGAATGCCAAGAGACATTTCCACTTAAGCAGCTGTTGCATCAACATGTTCTTGAACTGCATAATGGCTACAAATGCTCTGTGTGCGATAAACGATATCGTGTACAACTACAGCTCAGAATACACTTAAAGACTCATACAAGCGAAAAAGTACAGATACCTTGCCCCATGGCAGAATGTAGACGAACATTCAGCAATCAAAAAAATCTTGATAGCCATCTTGAAGTCCATACAATGGAATGTACTTTCGTGTGTGATATTGAAAATTGTGGTAAAGCTTTCCCCACTCAGCGTCGACTAATAGCACACGCACATACACATAAGAAACGAAACATATGTGACATTTGCGGCTATAGATGTCGATCGTATGCGACATTAGTTATACACAAGCGTGTACACACAGGAGAGAGGCCTTTTCCGTGTGAATTGTGCGCAAAACGTTTCGTTTCGAAGTCAGCTTTAAGTGAACATAAATCATATGTCCATGTGAGCACACGCTCTCATGTGTGTAAGATTTGCGAAGCTACATTTACCAATTTTAAATATTTGAAACAGCACACATTATTACATACCACTGATAGAAATTACAAGTGTAAATTGTGTGATAAAGCATTTAAGACCTCCCACGGCTTAAAGAGTCATATGAGGTATAATCACAGCATGGTAAATGTTAATCGAGAATTATGGGGAAAAAGTTCAAGGAAGACAAAGAAACAACATAAAACTGAGAACACCAATGAAAGTGTTGATGAAGGGTTTAATCAAAATCTACCCAAAGAAAAAGAGACACATACGGATTCTTCCGATAAATCAGAGAAAACCTCTAACGATCAAGAATTTGCACGTACCGAATGCAAGGAGTCATTTCCAAGTAATGAATTGTTTAATAAACATATTTTGGAACAGCATAACGAAGAACAACAAAAACCAAGTAAACACTTAGACAACGATAGCAATGAAAATAAAAATATTCCATGCCCCAGGCCAGAATGTAGACGAACTTTTGCTAATGAAAAAAATCTTAATCGTCACCTGGAGTTGCATACATTGGAAAGTACTTTTGAATGTGATTTTGAAAATTGTGGTAAAGCTTTTCCAACTAAAGCCCGTTTAATAATACATCGGCGTACACACAACAAACACAATGTATGTGATATTTGCGGGTATAGATGTCATGCTTACGCGACATTACTTGTACACAAGCGTGTACACACCGGAGAGAGGCCTTTTGCTTGTGAGTTATGCGAAAAACGTTTTATTGCGAAGACAGGCTTGTTGGAACACATGGCTGTCCATTCGACCACACGCTCACATGTGTGTGAGATTTGTAAAGCGTCATTTACGAATTTTAAATCTTTGCGTCGCCACAAATTAACACACACCAATGAAAGGAACTATAAATGCAAGTTATGCGATAAAGCGTTTAAGGTTTACAATGGCTTGGATAATCATATGAGATGTATGCATCGCGCACCTAAAGCCTTAAACGTTTCTGAAGACTTAAGCAGTACTGCTGAAAATTTTGAAGAATTCACTCTCAAACAAATTAAGCAGCCGGAAAATTCCCTTAAAAAGGAATTGAAATGTAAAGTATGTAATAAAGCTTTTAAGCGTCTCAATGGCTTGGACATTCACATGAGACGTTTTCATGGAGAAACTGATTCTTCAGTAGCTGAGAGTTATGAGAATTCCGATAAAAAGAAATTTAAATGCAATTTATGTAATAAGAAATTTACGTCTTTGATTCGTCACAATTTAACACATACCGATGATAGAAAATTTGAGTGCAAATTATGTGATAATATTTTTAAAACGTACAATGGCTTAAACAGTCATATGAAACGTATGCATGGAGATGCTGATACAGCGCAAGCTAAAGACATAAGCAATGCTGAGAGTTGTGAAGAGTTAAATCGAGACCTGAGTTAA
- Protein Sequence
- MLKVVPPINVSQQTQAKCGEIFFRSCTDFTIYCCFCNFKLFVFEDFLSHVQNVHFVNNLLKTQTITEVCEQLMKINGETEVIEPKKERDRFGSDELYENVGTTFEVAYKDEDTRESDVSYDSDDDFESSDSNFEDECSEESLLKVLHLKPEKIHWKRRITQINTINADESAEGDGLQLNQPQDEERNKSSSDESGKQRKEKKFACKECQETFPLKQLLHQHVLELHNGYKCSVCDKRYRVQLQLRIHLKTHTSEKVQIPCPMAECRRTFSNQKNLDSHLEVHTMECTFVCDIENCGKAFPTQRRLIAHAHTHKKRNICDICGYRCRSYATLVIHKRVHTGERPFPCELCAKRFVSKSALSEHKSYVHVSTRSHVCKICEATFTNFKYLKQHTLLHTTDRNYKCKLCDKAFKTSHGLKSHMRYNHSMVNVNRELWGKSSRKTKKQHKTENTNESVDEGFNQNLPKEKETHTDSSDKSEKTSNDQEFARTECKESFPSNELFNKHILEQHNEEQQKPSKHLDNDSNENKNIPCPRPECRRTFANEKNLNRHLELHTLESTFECDFENCGKAFPTKARLIIHRRTHNKHNVCDICGYRCHAYATLLVHKRVHTGERPFACELCEKRFIAKTGLLEHMAVHSTTRSHVCEICKASFTNFKSLRRHKLTHTNERNYKCKLCDKAFKVYNGLDNHMRCMHRAPKALNVSEDLSSTAENFEEFTLKQIKQPENSLKKELKCKVCNKAFKRLNGLDIHMRRFHGETDSSVAESYENSDKKKFKCNLCNKKFTSLIRHNLTHTDDRKFECKLCDNIFKTYNGLNSHMKRMHGDADTAQAKDISNAESCEELNRDLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045478;
- 90% Identity
- iTF_00045478;
- 80% Identity
- -