Agra009133.1
Basic Information
- Insect
- Aldrichina grahami
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig81:1059963-1062779[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.037 1.5 8.9 1.6 2 23 207 229 206 229 0.91 2 18 2.5e-05 0.001 18.9 1.5 1 23 232 254 232 254 0.99 3 18 0.00038 0.015 15.2 0.2 2 23 262 285 261 285 0.94 4 18 0.00037 0.015 15.2 0.2 1 23 291 315 291 315 0.97 5 18 0.00099 0.04 13.9 0.7 3 23 321 341 320 341 0.97 6 18 0.00064 0.026 14.5 0.3 1 23 347 370 347 370 0.93 7 18 0.0024 0.099 12.7 2.7 1 23 376 398 376 398 0.96 8 18 6.5e-07 2.7e-05 23.9 4.4 1 23 404 427 404 427 0.98 9 18 0.0081 0.33 11.0 0.6 1 23 487 510 487 510 0.92 10 18 0.00016 0.0064 16.4 0.2 2 23 532 555 531 555 0.94 11 18 2.7e-05 0.0011 18.8 0.2 1 23 561 585 561 585 0.97 12 18 0.094 3.9 7.7 1.3 2 23 590 611 590 611 0.97 13 18 0.0018 0.073 13.1 0.0 1 23 617 639 617 639 0.97 14 18 0.00011 0.0045 16.9 3.3 1 23 645 667 645 667 0.97 15 18 0.00099 0.04 13.9 2.8 1 21 673 693 673 696 0.96 16 18 1.3e-05 0.00053 19.8 1.0 2 23 735 757 734 757 0.97 17 18 0.041 1.7 8.8 2.0 1 23 776 795 776 795 0.80 18 18 0.00046 0.019 14.9 1.2 1 23 801 824 801 824 0.97
Sequence Information
- Coding Sequence
- ATGTTAAAAGTTGTACCGCCTATCGGTTTAAGCCAACAGACGCAAGCCAAATGTGGGGAAATATTTTTCCACAGTTGTACAGATTTCACAATTTATTGTTGCTTTTGTAAATTCAAATTATTCGCTTTCGTAGACTTTCTCTCTCACATACAAAATGTGCATTTTGTAAATAATTTACTAAAAACTCAAACAATAACAGAGGTTTGTGAACAACTGACGAAAATAAATGTTGATAATGGAGAAACAGAAGTGATTGAACCCAAGAAAGAGCTGGATAGATTTGAAACTGATGGTAATTTTGAAAATGTTGGAAGTATATTTGAGGCCGCGTCCAAGGACGAGGAGACGTGTGAAAGTGATGGTGCCTATGACACTGAAGACGATTTTGAAAATTCAGATAGTAATTTTAAGGACGACTGTTCTGATGAGTCTCTTCTGAAGGTGTTAAATTTTAAGCCAGATAAAATACCCGTGAAGAGAAGAATTAAACAGATTAACACTGCAAACGCTAACGAAATAGCTGAAGGGGATGGGTTACAACTAAATCAGCCTCAAGATGATGAAACAAATGAAAGTTCTTCTGATGAATCAGGGAAACAAAGCAAAGAAAAAAAATGTGCCTGTAATGAATGCCAGGAGACATTTCCACTTAAGCAACTGCTGCATCAACATGTCCTTGAGCTCCATAATGGCTACAAATGCTCTTTGTGCGATAAACGATATCGTGTACAACTACAGCTCAAAATACACTTACAGACTCATACATCCGAAAAAGTGCAGATACCTTGCCCCATGGCAGAATGTAGACGAACATTCACCAATCAAAAAAATCTTGATAGTCATCTTGAGTTACATACAATGGAATGTACTTTCGTGTGTGACATCGAAAATTGTGGTAAAGCTTTTCCCACTCAACGTCGACTAATAGCACACGCACATACACATAAGAAACGAAACATATGTGACATTTGCGGCTATAGATGTCGGTCGTATGCGACATTAGTTATACACAAGCGTGTACACACGGGAGAGAGGCCCTTTCCGTGTGATGTGTGTGCAAAACGTTTCGTTTCGAAGTCTGCCTTAAGTGAACATAAATCATATGTCCATGTGAGCACACGCTCCCATGTGTGTCAGATTTGCGAAGCTACATTTACCAATTTCAAATATTTGAAACAGCACAAATTATTACATACCACTGATAGAAATTACAAGTGCAAATTGTGTGATAAAGTATTTAAGACGTCCCATGGCTTAAAGAGTCATATGAGGTATAATCACAGCATGGTAAATGTTAATCGAGAGTTAAGGGAAAAAACTTCAAGGAAGACAAAGAAACAACCTAAAACTGAGAACGCAGATGAAAGTGTAGAAGGGTTTAATCAAAATCTACCCAAAGAAAAAGAAACACATACGGATTCTTCCTCTAAATCGGAGAAAACCACCAACGATCACGAATTTGCATGTGTTGAATGCAAGCAGTCATTTCCTAGTAGAGAATTGTTTGATAAACATATTTTTCAACAACATAACGAAGAACAACAGACCCCTAGTGAACAGTTAGACAACGATAGCAATGAAAATAAAAACATTCCTTGCCCCAGGTCAGAATGTAGACGAACTTTTGCTAATGAAAAAAATCTTAATCGTCACCTGGAGTTGCATACATTGGAAAGTACTTTTGTATGTGATTTTGAAAATTGTGGTAAAGCTTTTCCAACTAAAGCCCGACTAATAATACATCGGCGTACACACAACAAACACAATGTATGTGATATTTGCGGCTATAGATGTCATGCTTACGCGACATTACTTGTACACAAGCGTGTACACACCGGAGAGAGACCCTTTGCTTGTGAGTTATGCGAAAAACGTTTCATTGCGAAGACAGGCTTGCTGGAACACATGGCTGTCCATGCGACCACACGCTCACATGTGTGTGAGATTTGTAAAGCCTCATTTACGAATTTTAAATCTTTGCGTCGCCACAAATTAACACACACGAATGAAAGGAACTATAAATGCAAGTTATGCGATAAAGCTTTTAAGGTTTACAATGGTTTAGATAATCATATGAGATGTATGCATCGCGCACCTAAAGCGTTGAACGTTTCTGAAGACTTAAGTAGTACTGCTGAAAATTTTGAAGAATTCACTCTTAAACAAATTAAGCAGCCGGAAAATTCCCTTAAAAAGGAATTGAAATGTAAAGTATGTAATAAAGCTTTTAAGCGTCTCAATGGCTTGGACATTCACATGAGACGTTTTCATGGAGAAACTGATTCTTCAATAGCTGAGAGTTATGAGAATTCCGATAAAAAAAAATTTAAATGCAATTTATGTAATAAGAAATTTACGTCTTTGATACGGCACAATTTAACACACACCGATGATAGAAAATTTGAGTGCAAATTATGTGATAATATTTTTAAAACGTACAATGGCTTAAACAGCCATTTGAAACGTATGCATGGAGATGCTGATACCGCGCAAGTTAAAGACATAAGCAATGCTGAGAGTTGTGAAGAGTTAAGTCGAGACCTGACTTGA
- Protein Sequence
- MLKVVPPIGLSQQTQAKCGEIFFHSCTDFTIYCCFCKFKLFAFVDFLSHIQNVHFVNNLLKTQTITEVCEQLTKINVDNGETEVIEPKKELDRFETDGNFENVGSIFEAASKDEETCESDGAYDTEDDFENSDSNFKDDCSDESLLKVLNFKPDKIPVKRRIKQINTANANEIAEGDGLQLNQPQDDETNESSSDESGKQSKEKKCACNECQETFPLKQLLHQHVLELHNGYKCSLCDKRYRVQLQLKIHLQTHTSEKVQIPCPMAECRRTFTNQKNLDSHLELHTMECTFVCDIENCGKAFPTQRRLIAHAHTHKKRNICDICGYRCRSYATLVIHKRVHTGERPFPCDVCAKRFVSKSALSEHKSYVHVSTRSHVCQICEATFTNFKYLKQHKLLHTTDRNYKCKLCDKVFKTSHGLKSHMRYNHSMVNVNRELREKTSRKTKKQPKTENADESVEGFNQNLPKEKETHTDSSSKSEKTTNDHEFACVECKQSFPSRELFDKHIFQQHNEEQQTPSEQLDNDSNENKNIPCPRSECRRTFANEKNLNRHLELHTLESTFVCDFENCGKAFPTKARLIIHRRTHNKHNVCDICGYRCHAYATLLVHKRVHTGERPFACELCEKRFIAKTGLLEHMAVHATTRSHVCEICKASFTNFKSLRRHKLTHTNERNYKCKLCDKAFKVYNGLDNHMRCMHRAPKALNVSEDLSSTAENFEEFTLKQIKQPENSLKKELKCKVCNKAFKRLNGLDIHMRRFHGETDSSIAESYENSDKKKFKCNLCNKKFTSLIRHNLTHTDDRKFECKLCDNIFKTYNGLNSHLKRMHGDADTAQVKDISNAESCEELSRDLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259943;
- 90% Identity
- iTF_00259943;
- 80% Identity
- -