Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 5.9e-06 0.0029 17.8 4.2 7 44 100 139 98 139 0.84

2 7 0.0005 0.25 11.6 0.0 18 43 146 168 142 169 0.94

3 7 0.037 19 5.6 0.0 18 36 174 194 170 195 0.82

4 7 0.032 16 5.8 0.6 17 43 201 224 194 225 0.81

5 7 1.3 6.2e+02 0.7 1.2 6 39 219 253 218 257 0.76

6 7 0.26 1.3e+02 2.9 2.5 18 38 259 276 249 281 0.88

7 7 2.8 1.4e+03 -0.4 3.7 15 44 284 310 275 310 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	5.9e-06	0.0029	17.8	4.2	7	44	100	139	98	139	0.84
2	7	0.0005	0.25	11.6	0.0	18	43	146	168	142	169	0.94
3	7	0.037	19	5.6	0.0	18	36	174	194	170	195	0.82
4	7	0.032	16	5.8	0.6	17	43	201	224	194	225	0.81
5	7	1.3	6.2e+02	0.7	1.2	6	39	219	253	218	257	0.76
6	7	0.26	1.3e+02	2.9	2.5	18	38	259	276	249	281	0.88
7	7	2.8	1.4e+03	-0.4	3.7	15	44	284	310	275	310	0.76

Coding Sequence: ATGAATTTACGCAAACCATTAACGCTCAAACAATGGGATGACAATACTTCGAAATTCATCGATGCTTACGCAAAATGCCCACTTTTATACGACGGAGAGCATCCATTGTATGGAAATTTCGAGGAAATACAAAAAGCCAATCACGACCTTACAAATGCACTATTAACTGAACACAATATTGATTTAAAAGATGAAACCCTATCGACGGCAATCAGTCAATTGCATTCTTGGTATTACGATGCCAAACAACGGAAAGGAAAACAAAACGGTAGATTGAATAAGGACGAAGAGGAATATTTCAAAAAGTGTAGCTTTTTGCCAGCAAAACGTTTAAAAACGAAATTTTATTGTAACATTTGCAAGAAAAATTTCAACATGGAACACAATCTAAAGGGTCATCTCTTTAGATTCCATCAGATAGGAGACCTACCCTTCCAATGCGACCAATGTGGCAAAAAATTCGAAATCAAATCCACCCTACAAACTCACATTCAAAGAATGCACGTCAGTAGGAAATTCCCTTGCGGTTTCTGCGGAAAACTCTTTGCCATAAAATCGGAGCTAAAAGTTCACAATATGGTACACACAGCGGAAAAGCCACATGTCTGCGAACTGTGCGGAAAAGCGTTTAGAATAAAGACACAACTACGCTACCATGTTACAGCAATACACACAAAGATTCGTGCCTACAAATGTACCATGTGCCCCAAGGATTTCCTTAAGAAACGTGACTTGACCGATCACGTTAAAACGCACCTGAATATTCGCGACAAGATATGTGAAACGTGTGGAAAGGGCTTTTCGAACAGTCATTCGTTAATTCGACATCGTCAAATACATTCGGAAGTAAAGCGATACGCCTGTAAATTGTGCGATGCCAAGTTTCACCAATTTGTCGGTCTAAACGGTCACATGAAACGTACGCACAACATTGTAAAAAAAGATTCATAA
Protein Sequence: MNLRKPLTLKQWDDNTSKFIDAYAKCPLLYDGEHPLYGNFEEIQKANHDLTNALLTEHNIDLKDETLSTAISQLHSWYYDAKQRKGKQNGRLNKDEEEYFKKCSFLPAKRLKTKFYCNICKKNFNMEHNLKGHLFRFHQIGDLPFQCDQCGKKFEIKSTLQTHIQRMHVSRKFPCGFCGKLFAIKSELKVHNMVHTAEKPHVCELCGKAFRIKTQLRYHVTAIHTKIRAYKCTMCPKDFLKKRDLTDHVKTHLNIRDKICETCGKGFSNSHSLIRHRQIHSEVKRYACKLCDAKFHQFVGLNGHMKRTHNIVKKDS

Sequence clustering based on sequence similarity using MMseqs2