Basic Information

Insect: Calliphora vicina
Gene Symbol: -
Assembly: GCA_958450345.1
Location: OY288235.1:102842433-102848279[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00031 0.027 15.9 1.7 1 23 365 388 365 388 0.95

2 7 0.0012 0.11 14.0 1.7 2 23 394 415 394 415 0.97

3 7 8.5e-05 0.0074 17.6 4.3 1 23 421 443 421 443 0.97

4 7 0.01 0.9 11.1 6.2 1 23 449 471 449 471 0.98

5 7 0.001 0.087 14.3 4.5 1 23 477 499 477 499 0.97

6 7 7.3e-06 0.00064 21.0 0.3 3 23 507 527 505 527 0.94

7 7 8.5e-06 0.00074 20.8 5.2 1 23 533 555 533 555 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00031	0.027	15.9	1.7	1	23	365	388	365	388	0.95
2	7	0.0012	0.11	14.0	1.7	2	23	394	415	394	415	0.97
3	7	8.5e-05	0.0074	17.6	4.3	1	23	421	443	421	443	0.97
4	7	0.01	0.9	11.1	6.2	1	23	449	471	449	471	0.98
5	7	0.001	0.087	14.3	4.5	1	23	477	499	477	499	0.97
6	7	7.3e-06	0.00064	21.0	0.3	3	23	507	527	505	527	0.94
7	7	8.5e-06	0.00074	20.8	5.2	1	23	533	555	533	555	0.96

Sequence Information

Coding Sequence: atgaacaaaattaacgatTATATCAGATGTGGAAAGATGTGGTGGTCTGGAATTGTAccagagttggggGTCGATCCCTTGATTGTCATAAAACCAGAATATTTTTCAGACGAAGAATTCTCTTCAGTAAAAGATGAGTCAAAAATACCAGACAGTAAGATCACGAATAAAATCAATGAAGTCAATAGCGAAGTAAATAATTCATCACTAGTGAAGGAAGTATGTGAAACAGATGATTCGATGGAAAATGTGGACAAAATTATGGGCGAAGATTCAGACTGTAGTTATGATGAAATAGAAAATACCTCTGATAATAGTGTATCTTGCGATGATGATGACGACTACgaaATTGTGAAAAAATCTAAGAATGAATGGGAATGCACCAGAGGACAGTTACCTTATATAACCGAATTTCTGAAATCAAAGAAACATGTAATGGCTCTCATTGAGGCCTACAAAAATCAACCAtctttatggaataaaaatttcccATTTTTAAGGCATAAGTTAAAACGTCAAAACTGTTTACAACAAATTGCTCAAGAACTTAATACACAACATAATATGGATATTACTTGGAACCAAGTTGCAAACATTGTCGTATTTTTATGTCGAAAATATCGTGAAGATTTAAAAGGTATAAAAGAAACTAAGGAAGACGAAAAGAAATACATTTCATCGTGGTTCTTCGAAGATTTAAACTTCTTAAAACCTTTTATGGAAAATAATCCGATTGCAAAACTGGACTCACATTTGCCGGATCTATTGCCAGatcaaataatacaaatattagaAATATATAAAGGATTTCCCCACCTTTGGAATACGGAATTGATTGAAcattattgtaaaaataaaacagttgcTGCCAAACAAGAAATGTTGCAAATATTAGAAACGAAGATGGGTTTAAAAATTACAGAGCACATATTGGAGGATTATTTTCGCactataaataattgttttacaCGAGCGAAACGCAATAAATTGGACAATAAACCAAACAAGAAGAGCAAAGTATCAGTTACAGATGACAACGCACAGGAGGACTATTACGAACACATGCTTTTCCTATATGATCACGTAGGTTTCTTTAAATGTTCTGAATGTGAACGTTCATTCAAAAGTacattatacttaaaaatacacCAAACTCAGGTTCATGGAGCTGAACCGCCCTCGTGTTCCTTGTGCCAAAAGGTTTTCAAAACTGTCAATTCGTATACAAATCATGCAAAACGTCATATGGAAGATCTTAATCACGAGTGCAAAGAATGTGGAAAGAAATTTCTACATTCCAATGAATTACGCATACACATGCGTAATCATACCGGAGCCAAACCATTTTGTTGCGAAATATGTGGTGCTTCTTTTCGGCATATTCAAGGTTTTAGTAATCACCATAGAcgtcatataaaaaattatctacATACTTGCCACATTTGTAGCAAGGGTTTCTATTCAAAAGATCGTTACAATGATCATATGAATGCGCATTCTAATATACGTTCGCAAATATGTAATGTATGTGGCAAGACATTTATCACCAAAAGATCATTGCAGCAACACGTCGTAATACATGATGATGTTCGAAGACACGCGTGTAAATTATGCGGTAAAACGTTCAAACACAAAACTGGAGTTAATCAGCACATGAGAACACATGGCATAGCCAACAGTGAAGAAAAGAGTACgattaataaagaataa
Protein Sequence: MNKINDYIRCGKMWWSGIVPELGVDPLIVIKPEYFSDEEFSSVKDESKIPDSKITNKINEVNSEVNNSSLVKEVCETDDSMENVDKIMGEDSDCSYDEIENTSDNSVSCDDDDDYEIVKKSKNEWECTRGQLPYITEFLKSKKHVMALIEAYKNQPSLWNKNFPFLRHKLKRQNCLQQIAQELNTQHNMDITWNQVANIVVFLCRKYREDLKGIKETKEDEKKYISSWFFEDLNFLKPFMENNPIAKLDSHLPDLLPDQIIQILEIYKGFPHLWNTELIEHYCKNKTVAAKQEMLQILETKMGLKITEHILEDYFRTINNCFTRAKRNKLDNKPNKKSKVSVTDDNAQEDYYEHMLFLYDHVGFFKCSECERSFKSTLYLKIHQTQVHGAEPPSCSLCQKVFKTVNSYTNHAKRHMEDLNHECKECGKKFLHSNELRIHMRNHTGAKPFCCEICGASFRHIQGFSNHHRRHIKNYLHTCHICSKGFYSKDRYNDHMNAHSNIRSQICNVCGKTFITKRSLQQHVVIHDDVRRHACKLCGKTFKHKTGVNQHMRTHGIANSEEKSTINKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00200229; iTF_00260123; iTF_00045643; iTF_00922385; iTF_01261367; iTF_01259542; iTF_01194717; iTF_01259552;
90% Identity: iTF_00045643;
80% Identity: -