Cvic020034.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vicina
Gene Symbol
-
Assembly
GCA_958450345.1
Location
OY288234.1:110067932-110075180[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.24 21 6.8 0.8 1 23 286 309 286 309 0.93
2 13 0.018 1.6 10.3 1.2 2 23 392 414 391 414 0.95
3 13 4.7e-06 0.00041 21.6 1.2 2 23 1020 1041 1019 1041 0.97
4 13 0.00027 0.024 16.0 2.3 1 23 1047 1069 1047 1069 0.97
5 13 7.5e-07 6.6e-05 24.1 3.5 1 23 1077 1099 1077 1099 0.99
6 13 0.02 1.7 10.2 0.1 1 23 1105 1128 1105 1128 0.97
7 13 0.0012 0.11 14.0 2.1 1 23 1300 1322 1300 1322 0.98
8 13 0.04 3.5 9.2 0.8 3 23 1330 1350 1328 1350 0.97
9 13 0.00092 0.08 14.4 5.9 1 23 1356 1378 1356 1378 0.98
10 13 3.5e-07 3.1e-05 25.1 0.4 1 23 1384 1406 1384 1406 0.99
11 13 0.00013 0.011 17.1 2.9 1 23 1412 1434 1412 1434 0.98
12 13 0.00014 0.012 16.9 3.8 1 23 1442 1464 1442 1464 0.99
13 13 0.00014 0.012 17.0 0.5 1 23 1470 1493 1470 1493 0.97

Sequence Information

Coding Sequence
ATGATCAACACTTTGCTGGAGCATGTGCCCATCAAAATGGAAGTCAAAGACATTGATGAAGAGGCCACAGATAATGCAGCAAATGAGGCAACTGGCTTAGAAATGGCTAATGATGATGAAGAAATTGATGAGACCGATGAAGAGCTagacgacgatgatgatgaggaAGACGAAGAAGATGAGGAGGAAGAGGATGAAGAAGAGTCTGAAACAGAAACTGATGCCCTGGAAATTGAACAAGAGGCTACCATGTTAATAAGCAGTGATGAAGAAGCCGAACTGGAGGCTCAAAGAATACGTTTTCCCGATAAAATGGCCGTCAAAAAATTGCGTCGCGACTCCCTTAAATCTTCACGCAGCTCCTCCAGAAATAGCCAAAATAGTAATTCATCTTCCACTAAATCGTCCAAGCCTCAAAATACAGCCGAAGTTGTTGCTTTAAAAGACACCAGGGAGGAAACAGACAAGAAACAAAGAATTTCACCTCGCCTTAAGCTTATGGAGAAAAATACATCTGTGGAGAGCTTGCAAAAAGAgaacaacaataacacaaaTACACAAACGAAAAAGAAAACGGAGcacaaaaaattggaaaataacaaaaacaaacagcaaGAGACAAGCAAATGTTTGGACAACAATAAATCTACTgagagcaacaacaaaaacttggAAAATAATCGTAATATCGAAAATTTACGCAAATCTCCTGCCAATGTTCCATCTCAGGCCTCAAAGAGTCGCCGAGGCAGTAATAATTCCACTTGCAGTGTAGCCTCTACGGTGGCCTCGGATTCTGCCGAAACCGAATCCTGTGGCAATATTTATGTCTTCAATTTGCAACAGAAACTTATATTCAATTGTGAATTTTGCGATTTGAAATATGGGGATTTGGAGAATTTTGGACGTCATCTGCATGAGGCCCACAAACTCTTCAGTTTCGATGAAGATCCTGAAAAGGAAAATGCTCCTCGGAATTTGCGCAAAAGCAATCGTATGTCTAATTCAAATAATGCGCCCAAAAATGCCGCCAATGTAAAAAAAGAACCCCTACAATGTCTAGATGCGTTGGCCGAACCACCACCTGTTGTTGCTTTGCCGCTTTCCGTTTTGGCTGAGCCTTTAGAATCATGTGGCAATGTTTTTATGTTGAATCATCGTAAATTGTTTTTGGTGTGTGGCTACTGTGAGTGTAAATACGCCAATTTGGATTTGTTTGAGAAACATTTAAGGCAACAGCATCGTATTTTTGAGGGTTGTCGCAATGAGGTGAATGTGGTGCCCAAGGTGGAGATCAAACAGGAAATGTTTGTTATTACGGAAGTGTTGGGGCAACAGGATCATATAGCTCCCCAAGCTATGGTCAGTATACCAGCAGAAATTCCTTTAGATATAAGTATTTCACCAGAAAATGAGGCAGCCACAATAGCGGCTTTAAATGAAACAATGGAAATGGAAGAAGATGTCCTTGAAGAGCAGCCAACATCATCATCCTGTGCTAAGGCAGACAATGGCTTGGTTTCTACTTTACTTAAGGAACCATTAGCAAAGGATGCTATAACAAATGAACATTCTAAACCAAAAGATAGTGAAAATTTGTTAGAAGCTATGGAGGTGGAGAAACCTGTTGCTGTTAAGAAACCGAGAAATAAAAGACGTTCGTCTCCTGTTAAACCTTTAGCTTCGCCTAATAAACGTCCTAAAAGAAATACCaggaataaaacaaaagttcaaGAGGAgacCACTCCCACAATTGTAGAACCTAATGTCGCTGAACAAATTGCTCCCACAGAAACAACTCAACTTATGGAAACAGAAAATATCAATGTAACTATAAAATCTGCAGACACTAAACCTAACATATCAAAGGAATCTACCGAAGAATCTACCGAAAAATCTTCAGATACTATAGAACCACAGACAACCACAACTCCAGACAAAGCTGCTGAAACTGAGAAAGTAATTGTTCAAGAAACGACAGAAACTAAAGAAATCAAAAAGCCCACAAAAACGAAGaaaacaacttctacagaaaCGACAGCAACCAGGAAGTCTATATCAACAGAATCGATAGAAAACAAGAAACCCACAAAATCTGCGGAATCTAAGCAGATAACACCTCTAGAAACGATAGATACCATTAATACCACAAAAACGGCAGAATTTAAGAAAGCTACTTCTCCTGAAGTAGTAACAGAAACCAAGAAACCTATAAAATCGGCAGAACCTAAAAAATCCAATCCTAAACAAACGACAGAAACTAAGGAAATCAAAACTCCCACAAAAGCTGAAGAATCCAAGAAACCAACAACTATCGAAACAATAGAAATACAAGAAACCAAGAATCTTAGAAAAACTGCAGAATCCAAGAAAGTAACACCTATAGAAACAACAGAAATCAAGAAGTCTACAAAACCTACAGCATCCATGAAAGTAacatctacaaaaacaacagaaactACAGAAACCACGAAGGCTACAAAAACTGTAGGATCCAAGAAACCAACAGCAGCTCCAGAAACTAAAGAAGCCCGAAAATCAGTAGAAATAAATGAATCAACACCTGCAGTAATCCCGGAAACTAAAGAAAGCGCAATATCTATAAAATCGGCGGAAACAAAGGAACCAACAATTGCTGTAGTAAGTTCAGAAACTAAAGTAAACAGAGTAACAATAAAAGCACAAGAATACAACAAACCAATAGCACAAGAAACGGAAGCAACTAAAGAAACCagaaaaactacaaaaacacAAGAATTAACAACTccagaaataaaagaaaacagaaaatcaacaaaattagaAGCAAACGAACCAACAATAATTCCAGAAGAAACAGCAGAAGCTATAACAGAAACTGAAACGAATAGCTTGACAACACAGGAACTCTTGGAAACCCAAACACCTACAAAAGCTGAAGCAAGAAAACCTAAACAAACTAAGAAAGGCAGAAAATCAACAACTAAAGCTCCTAGAAAATCCACAGAAACTAAAAAGCCAACCAAGCTGGAAACACCAGACTCGGAAATTGAACCGGAATCTAGTGAAACCGAAATGCAGTGTAACGAATGCGACAAGAAATTTGCGCGACGCGAAAGTTTGAAAATACACAAACGCGTACATACCGGCGAGAAGCCGTTCGTTTGCGATATTTGCCAAAAAACTTTCCGGGCCAAACAAAATCTCACCATGCACAAAAAGTTTCACATGGGCGATGCTTCCAAAACCTTTGAATGTGAACACTGTGACAAGAAGTTTATGCGCAACACCGATCTCAAGGTGCACATGAGAACGCATACGGGTGAGAAGAAATTCAAGTGTGGCATCTGTTTGCAAGGTTACGCCTCGAAAGTCAATGTACAGACTCACATAGAGAGAGATCATTTGTCGGCGGATGGGGTAGTGGGCACACCACCCCGTGGCAAAAAGAAATCAGGGCCCAATTTCAAGGTCTTAAGGGAAGAGCTGGAGTATCAGAAGAAAATCATCGAAGAATTGCAAAAAGCCAAAAAGGAAAAAGAAATCATCACACCAACTTTACAGCCAACAACACCACCACCACCCCCCTCGCCCGTGGAGCAGTTAACAGCAGAAACGCTACAACACTATGCAGAGGAGGACAGTGACATGCAAGATCTCAATGCTGATCCGGTTAATGATATAATTGAACAGatacaaaatgaaattttactaaGCGAACAAGAACGCCAACAAGAAAATGTTCAAGCCAACTCGGTAACCTTCACCATAAACACTGTGCCCGACAGTAATGAAGCATTAAAGCTGCACAACAATGCTAACACCAGCACAAACTCAATTGTTCTAGAGTCACAAGCCAATGAACTGTTAAATTCTCCCGTAGACATTAAACCTACGCTGTTGCAAGTTGTTAAGCGTTATGTCTGCGATCAGTGTAATCGTACGTTCAAGAAACACATACGCCTAGTGGAACATCTACGTGTGCATACGGGCGAGAAACCGTTTGGTTGCGATGAATGCGGCAAACAGTTTCGCATACGCATGCGTCTGAACGAACACAAACTACGACATTCCAAAgacaagaaatttaaatgtgaAATCTGTGGTTTAGGCTGTTGCACCAAGCAGGACTTGAACTTACACATGCGTCATCACACCAATGACAGGCGTTTCCAATGCTCCATGTGTCCCAAGGCATTTGTGCGTAGCTCCGATTTGAAGACACATGTACGTGTACACACCGGCGAAAAGCCGTATGTCTGCGACATATGCCACAAATGTTTCCGGGCCAATCCAAATCTCATCGTACACAAAAAGTCACACATGGGAGAGGCCTCCAAAACCTTTCAATGTGAACACTGTGATAAGAAGTTTATGCGCAACATTGATCGCAAAGTACACATGCGATCACACACAGGTGAGAAGCCCTACAAATGTGAGATCTGTCAACGTGGCTATTCTTCGAAATTCAATGTGCGAGCTCACATAGAAAGAGATCATATATCGGCCAATGGCATGGGCACACCACCCAAGGGTAAAAAGAAACCAGGACCCAAACCCAAGAGTTTAAAGGCAGAATTGGAGAAACAAAAGAAACTCATAGAGGAATTGCAACATCAACTGTTGCAGCAGATAAAAACCGACGAAAAGATCATACCCTCCGAAGAAGAAATCTTACCACACGACACTTTACAAGATTGCACCATAACAGCCTCCTCGCCGCTtgtcagcagcagcagcaatgaTCCCATACAAAATGCTTACGATTTGCTGAAAAAACTGAAATCAGCTACAACTACCTCCAAACCCTTAACTATAATTCCATCGCCTCCTCCAATGGCAGAGCCAGCCTCAAATCCCTTTACAAAAGCCAAAAAGGCCTGCTCCACTTTACTACCTCTGACCATAACTCAAAAAATTGAACAACACTCACCGGTGCCCTCCACCTCATCAAGTACTTCGCTATCATGTCTAACAACACCCTCACCGCCCAAGACCACAGCCACCAAGGTGGTGTCACAAAAGACTTCGCTGGGCATACAACAAGTATCGGTGACCGTATCCATGCAGGTGGAAAATGTAACAGCAGCCAGTTCCCCCACCACCCCCGAGAAAGAGAATGCTGGCATTTTGACAACAAGCTCGAGCGGCGGCGCAACAACGACAATGACTAGTGTTAAGAAGGAACggaaaataactagttattttacggTGGTGGGTCAAAAGGCAGATGCTTAA
Protein Sequence
MINTLLEHVPIKMEVKDIDEEATDNAANEATGLEMANDDEEIDETDEELDDDDDEEDEEDEEEEDEEESETETDALEIEQEATMLISSDEEAELEAQRIRFPDKMAVKKLRRDSLKSSRSSSRNSQNSNSSSTKSSKPQNTAEVVALKDTREETDKKQRISPRLKLMEKNTSVESLQKENNNNTNTQTKKKTEHKKLENNKNKQQETSKCLDNNKSTESNNKNLENNRNIENLRKSPANVPSQASKSRRGSNNSTCSVASTVASDSAETESCGNIYVFNLQQKLIFNCEFCDLKYGDLENFGRHLHEAHKLFSFDEDPEKENAPRNLRKSNRMSNSNNAPKNAANVKKEPLQCLDALAEPPPVVALPLSVLAEPLESCGNVFMLNHRKLFLVCGYCECKYANLDLFEKHLRQQHRIFEGCRNEVNVVPKVEIKQEMFVITEVLGQQDHIAPQAMVSIPAEIPLDISISPENEAATIAALNETMEMEEDVLEEQPTSSSCAKADNGLVSTLLKEPLAKDAITNEHSKPKDSENLLEAMEVEKPVAVKKPRNKRRSSPVKPLASPNKRPKRNTRNKTKVQEETTPTIVEPNVAEQIAPTETTQLMETENINVTIKSADTKPNISKESTEESTEKSSDTIEPQTTTTPDKAAETEKVIVQETTETKEIKKPTKTKKTTSTETTATRKSISTESIENKKPTKSAESKQITPLETIDTINTTKTAEFKKATSPEVVTETKKPIKSAEPKKSNPKQTTETKEIKTPTKAEESKKPTTIETIEIQETKNLRKTAESKKVTPIETTEIKKSTKPTASMKVTSTKTTETTETTKATKTVGSKKPTAAPETKEARKSVEINESTPAVIPETKESAISIKSAETKEPTIAVVSSETKVNRVTIKAQEYNKPIAQETEATKETRKTTKTQELTTPEIKENRKSTKLEANEPTIIPEETAEAITETETNSLTTQELLETQTPTKAEARKPKQTKKGRKSTTKAPRKSTETKKPTKLETPDSEIEPESSETEMQCNECDKKFARRESLKIHKRVHTGEKPFVCDICQKTFRAKQNLTMHKKFHMGDASKTFECEHCDKKFMRNTDLKVHMRTHTGEKKFKCGICLQGYASKVNVQTHIERDHLSADGVVGTPPRGKKKSGPNFKVLREELEYQKKIIEELQKAKKEKEIITPTLQPTTPPPPPSPVEQLTAETLQHYAEEDSDMQDLNADPVNDIIEQIQNEILLSEQERQQENVQANSVTFTINTVPDSNEALKLHNNANTSTNSIVLESQANELLNSPVDIKPTLLQVVKRYVCDQCNRTFKKHIRLVEHLRVHTGEKPFGCDECGKQFRIRMRLNEHKLRHSKDKKFKCEICGLGCCTKQDLNLHMRHHTNDRRFQCSMCPKAFVRSSDLKTHVRVHTGEKPYVCDICHKCFRANPNLIVHKKSHMGEASKTFQCEHCDKKFMRNIDRKVHMRSHTGEKPYKCEICQRGYSSKFNVRAHIERDHISANGMGTPPKGKKKPGPKPKSLKAELEKQKKLIEELQHQLLQQIKTDEKIIPSEEEILPHDTLQDCTITASSPLVSSSSNDPIQNAYDLLKKLKSATTTSKPLTIIPSPPPMAEPASNPFTKAKKACSTLLPLTITQKIEQHSPVPSTSSSTSLSCLTTPSPPKTTATKVVSQKTSLGIQQVSVTVSMQVENVTAASSPTTPEKENAGILTTSSSGGATTTMTSVKKERKITSYFTVVGQKADA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00259965;
90% Identity
-
80% Identity
-