Basic Information

Insect: Calliphora vicina
Gene Symbol: -
Assembly: GCA_958450345.1
Location: OY288235.1:101175250-101184530[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.004 0.35 12.4 1.3 1 23 29 51 29 51 0.98

2 13 2e-07 1.8e-05 25.9 0.7 1 23 58 80 58 80 0.98

3 13 0.00043 0.037 15.4 0.3 1 23 86 108 86 108 0.92

4 13 6.1e-07 5.3e-05 24.4 0.9 1 23 114 136 114 136 0.98

5 13 0.001 0.088 14.2 3.6 1 23 143 165 143 165 0.96

6 13 0.0011 0.097 14.1 2.2 1 23 241 263 241 263 0.98

7 13 1.8e-06 0.00016 22.9 0.4 1 23 273 295 273 295 0.98

8 13 9.1e-06 0.00079 20.7 1.6 1 23 301 323 301 323 0.92

9 13 2e-06 0.00017 22.8 0.1 1 23 329 351 329 351 0.96

10 13 6.9e-05 0.006 17.9 1.1 1 23 358 380 358 380 0.96

11 13 2.4e-07 2.1e-05 25.7 1.3 1 23 386 408 386 408 0.98

12 13 2.2e-06 0.00019 22.6 3.5 1 23 414 436 414 436 0.99

13 13 0.06 5.3 8.7 0.3 1 23 442 464 442 464 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.004	0.35	12.4	1.3	1	23	29	51	29	51	0.98
2	13	2e-07	1.8e-05	25.9	0.7	1	23	58	80	58	80	0.98
3	13	0.00043	0.037	15.4	0.3	1	23	86	108	86	108	0.92
4	13	6.1e-07	5.3e-05	24.4	0.9	1	23	114	136	114	136	0.98
5	13	0.001	0.088	14.2	3.6	1	23	143	165	143	165	0.96
6	13	0.0011	0.097	14.1	2.2	1	23	241	263	241	263	0.98
7	13	1.8e-06	0.00016	22.9	0.4	1	23	273	295	273	295	0.98
8	13	9.1e-06	0.00079	20.7	1.6	1	23	301	323	301	323	0.92
9	13	2e-06	0.00017	22.8	0.1	1	23	329	351	329	351	0.96
10	13	6.9e-05	0.006	17.9	1.1	1	23	358	380	358	380	0.96
11	13	2.4e-07	2.1e-05	25.7	1.3	1	23	386	408	386	408	0.98
12	13	2.2e-06	0.00019	22.6	3.5	1	23	414	436	414	436	0.99
13	13	0.06	5.3	8.7	0.3	1	23	442	464	442	464	0.95

Sequence Information

Coding Sequence: ATGAACAGCGATAACCAACATAAACCAGCAGCAAGAAAAAAGAAATCCGTAAAGGAAAAACAAATCGATGGCCAACAACAGTTTTATCCTTGTGATAAATGCAAAAGAAAACTGAAAACAGAATTATCATTTATAAAACACCAAGAAATGCACGAAAATAAAGAACAAACATATAATTGTTCCATATGCAAACAAgTATTCGGTGACAAATCTGAGCTAAAAGATCATATGCGCACACATAGTGGTGAAAAGGTATTTTTATGTTCGGAATGTGGGAAAGGATATACAACAGCTGGAGGTTTGAAAGAACATTCATTCCGTCATCtaaacgaaaaaaactttcaatgTCCTGACTGTCCCCGCTCGTTTACTACCAAAACAGATTTGGTCTCCCATCATATAATACATAAAGCGAAGCCAAAGAAGCACATCTGTGACATTTGCGGACGTGGCTTTCACAAGCCTTTCCTattgaaaaaacacaaaatgtaTCATAACAATGACAGACCATTCGCCTgtgaattttgtgaaaaacgAAAATCTAACAAAACTGATAAATCTAAAATTCTCAAAAGAGAAGAAGTTGATGATGACGTATTTGAATCATTATTATATGACGATGATGAAGATGTtaaggatgatgatgatgatgaagactACGAGGAGTTTGTCACACAAATCTCCGCATCAGGTAAAGAACAAATTACCGTGGAGCCCATTTATCCCTGTGACAGAtgcaaaagaaaattgaaatcaaaattatcGCTAAAAAAGCATCAAGAAATGCACACCAAACGAGATAATGAGGAACCGAAATTTGTGTGTAATGTTTGTGATAGAGCATTTTCACAAGGCTATATGCTAAAAGATCATCTGCgtacacacagtgGCGAAAGACCATTTTTATGTTCAGAATGTGGAAAATCCTTTACATCATCCGGCAGTTTAAAACAACATTCATTCCGACATCTTAATGAAAAGCTTTTTAACTGTCCGGATTGTCCAAAATCATTTCCTACAAAAACTGATTTGGCGTCTCACTACGATGTTCATAAAGCGAGGCCAAGAACACATATTTGCGATATTTGCGGTCGTGGATTTCCAAAAccatttctattgaaaaaacataaaatgtatcACACTAATGATCGGCCATTTTCTTGTGAATATTGTGATAAACGTTTCATAACGAATGAGAAACTGCAACGCCACGTTAGAATTCATACTGGTGAAAAACCATATAAATGCAGTTATTGTGAGAAGGCATACTGTCAATCGAATGAATTAACCAAACATTTAAGAATTCATTTAGGAGATAATGTATATCAGTGCGAATTGTGCCCTCTAAGATTTCCCACAGTTAAAGTAGTCCGAGAGCACTTCTCTACGCATAAAAACGATGATGAGGAAACTAAATCCCGCAATTTGGCAGAACTTAATGCGTTgactttaaaaggaatttattgtaGATAA
Protein Sequence: MNSDNQHKPAARKKKSVKEKQIDGQQQFYPCDKCKRKLKTELSFIKHQEMHENKEQTYNCSICKQVFGDKSELKDHMRTHSGEKVFLCSECGKGYTTAGGLKEHSFRHLNEKNFQCPDCPRSFTTKTDLVSHHIIHKAKPKKHICDICGRGFHKPFLLKKHKMYHNNDRPFACEFCEKRKSNKTDKSKILKREEVDDDVFESLLYDDDEDVKDDDDDEDYEEFVTQISASGKEQITVEPIYPCDRCKRKLKSKLSLKKHQEMHTKRDNEEPKFVCNVCDRAFSQGYMLKDHLRTHSGERPFLCSECGKSFTSSGSLKQHSFRHLNEKLFNCPDCPKSFPTKTDLASHYDVHKARPRTHICDICGRGFPKPFLLKKHKMYHTNDRPFSCEYCDKRFITNEKLQRHVRIHTGEKPYKCSYCEKAYCQSNELTKHLRIHLGDNVYQCELCPLRFPTVKVVREHFSTHKNDDEETKSRNLAELNALTLKGIYCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01399683;
90% Identity: iTF_00259944;
80% Identity: -