Csim027567.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- POL
- Assembly
- GCA_951812925.1
- Location
- OX638370.1:123650945-123667695[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.7e-12 3.9e-08 34.6 2.7 2 38 50 86 49 96 0.92 2 4 6e-11 2.4e-07 32.0 2.9 3 38 152 187 150 189 0.95 3 4 1.8 7.1e+03 -1.5 1.1 2 14 752 764 751 766 0.83 4 4 5.8 2.3e+04 -3.2 0.2 48 62 898 912 894 914 0.79
Sequence Information
- Coding Sequence
- ATGGCTTACAATAACTCATCTAATCAGCCACCACCATATAGTGACAATCCACCTGGTTTTACACCAGCTTCATCATACCAACCACCACCACAACAGGCAACGGTGATCATTCAAACAACAACTAGACCAGGACTGCCAGTTTCATCGGGACCGTGCCATGTAACGTGTCCCTCTTGCCATGCTCAAATACTCACCACAGTGAAGCATGAACCCAACTCGCGTACGCATTGCATTGCATTGTTGTTGTGTCTTTTCATCAAGGCACCCATACAGCCACCACCATATACTGAACAGCCTCAAAGCTATACACCAGCTTCATACTATCAGCCACCACCCCATGGACAACATAATCCACCACAACCATCGCTGTATCCACCAATGCCACCAACACAACACGCGACCGTCATCATTCAAACTACACGACCTACAACGGTGGTACCCATAGCGCATGGACCATGCCGCATAACATGTCCATCCTGTCATGCTGAAGTACTGACGACCGTTAAGCATCAGCCCAGTGGTCGCACTCATTGCTGGGCACTGATGTTATGTCTTTTTGtCGAGTTGGAAAAGCGGAATTTACAAACGGCTGGCAGAAAGGTGGAACTGCAGCAGCGATTGCGGAGTGCTTTTGAAGAAGATGGTGTGAATATTGATGAGTTTGACTTTGCAGAAGAGACATCGAAAGTAGAGGAAGCTTCTGGATTAGCGGCAAGTAGTGAAGTTGTGGATATGTCAAAGTTCGAGCAAATGTTAATGGCGATGACgcagatgaataaaaatatccaggcgCTCCAATTCGAGACAACATCCACTCATAACCTTTGGGATAACGATAGCGCAGCAGCAGCGCTTATCGTCGCTTTAAAAGGCGCAGCTGCAGAAGTATTGCAAACGGTTCCAGTGGCGGAGCAGAAAAATTACAAGGCGGTGATGGATGCATTACAGCGAAAATATGGCAGTGACCACATGAAACAGATTCACAGACTAAAGTTGAAAAGTCGTATCCAGAAATCTGGTAATTTTCAGCCAATTCGTCAACCTCCAAGGAGGCTAGCACTCGCTAAGAGAGAAGAAGTGACGGGCCTTATAGAAGAAATGGCACAAGAGAATGTCATTACACCATCAGAAAGCCCGTGGAGTTCACCGGTCGTACTTGTCAAGAAAAAGGACGGAAGCATGCGATTCTGTGTGGATTACAGGAAATTGAATGATGTCACCAAAAAAGACAGCTACCCGTTACCCAGAATCGATGATACACTGGATACGTTATCTGGAGCAACATGGTTTTCCACCCTGGACTTACAAAGTGGATATTGGCAGGTGGAAATAGATGACAAAGACAAGGAGAAAACTGCATTCAGTGTTGGGAATGGTCTATGGCAGTTTAACGTTATGCCATTTGGTCTTTGTAACGCTCCAGCTACGTTCGAGCGGTTAATGGAACGAGTTCTCAAAGGACTACATTGGAGGACTTGTTTAGTGTATCTTGATGACATAATCATCATGGGAAAAGATTTTGATGACCACTTGAAAAATCTGGAGGAAGTATTTGAGCGCTTGGAGGCAGCTGGACTAAAATTAAGTGCGAAAAAGTGCTCACTTTTTCAGCGTGAAGTCAAATATCTGGGACACAAGGTAACGTCAGAAGGAATACACACAGATGaggataaaataaaagctgtcaaaaattggCCACGACCATCTAATCTTCATGAGTTGCGAAGTTTCCTGGGCCTATGCCCAGGTTTCGCAAACGTCGCAGGCAGTCTACATGAGCTGACAcagaaaaatcggaaatttgAATGGAGTAGCACACAGGAAGCTGCATTCCAAAAGCTGAAAGAATTATTGTCTACAGCACCAGTACTCGCGTATCCAATGCCaggtgaaaaatttatattggacaCCGATGCGAGTGGCTATGGTATTGGAGGAGTTTTGTCCCAAGTCGTCAATGGACAAGAAAAAGTCGTCgcatatttcagcaaaattttgtcGAAACCTGAGAGGAATTATTGCGTAACTCGGAGAGAGTTACTggcagtaatggaatgcgtAAAACACTTCCATAAGTACTTGTATGGACAGCACTTTCTCCTGAGGACAGACCATGCGGCATTAAGGTGGCTACTTCAATTCAAAGATCCTGAAGGCCAAATCGCACGATGGATAGAACGCTTGCAGAGCTATGATTTCACCATAGAACATCGCAAAGGAAGCCAGCATGGAAATGCAGATGCACTTTCCCGTCGTCCATGTAAAATTGAATGCGGCCATTGTTCAAGAACGGAAAATAAAGCTGGAACGATTGATGTGCGCCTTTTGAACGTTTTGCCTGAAGAAAAGTGGACAAATGAGGAGATACAACGGGACCAGCGCAGTGATACAGATTTGGCAACAATAATTAAGTATAAGGAGCTGGGTAGGAAACCGGCGTGGCAAGAAATCTCAAGTGAAAGCCAAATATGTAAAGCTTACTGGGCGCAATGGCAAAGTTTGGAGTTGCATGATGGTTGCCTATATCGAATCTGGGAAAGCGAGGATggtaaaattcgctcaaaactgctggttattccaaaggcaaaatttaaggaaataatcGAGGATTATCACAATGGATCGAGTGGTGGACATCTGGGTATAACAAAAACCACAGAGAAAATAAAGAATCGGTTTTACTGGGTAGGATGCCAAGAAACAGTTGCTGACTGGATCCGCCGTTGTGACCAATGCGCAATTGCTAAAGGACCAAGGCGACGAACTCGCGGGAAAATGCATCAGTATAACGTTGGAGCTTCCTTTGAGAGGATAGCCATGGATATAGCTGGACCTTTTCCAATCGGCAatgcaggaaataaatacatccttgtggtaattgattacttcagtaagtggccagaagtatatcccattcccaatcaagaagcaaaaacagtggcagacattttcatcaaaaattggatttgtcgaTATGGAGCTCCACTTGAGTTGCATTCCGACCAAGGACGAAATTTTGAGTTGGCACTTTTTAAAGAGGTTTGTGGCTTGCTTGAAATACAGAAGACACGTACCACAGCATTGCATCCTCAGTCCGATGGCATGGTCGAAAGGTTCAACCGTACTCTAGAGGAGCATCTAAAAAAGGTTGTCGACAAAGGACAAAAAGATTGGGATGAGCGTCTACCAATGTTTCTAATGGCTTATCGTTCGTCGATACACGATACCACTACAGTCACGCcagcaaaagccatttttggtaCGGACTTAAGGCTTCCAGCAGATTTAAAGTACGGAGTAAGCGTTGTCTCAGAAACGACCCATGCTGACGATTACATGTCGCGAAAAAGAGAAGAACTGGCTGATATACACGAGCTTATCAGGAGACGTACTCAATTGGCTAGCGACAAGATGAAAGCTCGATATGATCTGCGAGCAAATACTGAAGGGTTCAAAGAAGGTCAATTAGTGCTGCTACACAACCCACAACGAAAACGAGGCTTGTCCCCTAAATTACAGACTCACTGGGAGGGACCTTACCGGATCGTCACAAGGATAAACGATGTTGTGGATCGAATCCAAAAATACCCCGGTaacaaagaTGTTGGCCATGCGTGTGCCTACCCTACTGCATGGATTCTTGTCAAAACGCTAATCACTACTGTCCTAACTGTAACGCATATATTGGAAGCTATTCGGGCTAAAGTATTATACTAA
- Protein Sequence
- MAYNNSSNQPPPYSDNPPGFTPASSYQPPPQQATVIIQTTTRPGLPVSSGPCHVTCPSCHAQILTTVKHEPNSRTHCIALLLCLFIKAPIQPPPYTEQPQSYTPASYYQPPPHGQHNPPQPSLYPPMPPTQHATVIIQTTRPTTVVPIAHGPCRITCPSCHAEVLTTVKHQPSGRTHCWALMLCLFVELEKRNLQTAGRKVELQQRLRSAFEEDGVNIDEFDFAEETSKVEEASGLAASSEVVDMSKFEQMLMAMTQMNKNIQALQFETTSTHNLWDNDSAAAALIVALKGAAAEVLQTVPVAEQKNYKAVMDALQRKYGSDHMKQIHRLKLKSRIQKSGNFQPIRQPPRRLALAKREEVTGLIEEMAQENVITPSESPWSSPVVLVKKKDGSMRFCVDYRKLNDVTKKDSYPLPRIDDTLDTLSGATWFSTLDLQSGYWQVEIDDKDKEKTAFSVGNGLWQFNVMPFGLCNAPATFERLMERVLKGLHWRTCLVYLDDIIIMGKDFDDHLKNLEEVFERLEAAGLKLSAKKCSLFQREVKYLGHKVTSEGIHTDEDKIKAVKNWPRPSNLHELRSFLGLCPGFANVAGSLHELTQKNRKFEWSSTQEAAFQKLKELLSTAPVLAYPMPGEKFILDTDASGYGIGGVLSQVVNGQEKVVAYFSKILSKPERNYCVTRRELLAVMECVKHFHKYLYGQHFLLRTDHAALRWLLQFKDPEGQIARWIERLQSYDFTIEHRKGSQHGNADALSRRPCKIECGHCSRTENKAGTIDVRLLNVLPEEKWTNEEIQRDQRSDTDLATIIKYKELGRKPAWQEISSESQICKAYWAQWQSLELHDGCLYRIWESEDGKIRSKLLVIPKAKFKEIIEDYHNGSSGGHLGITKTTEKIKNRFYWVGCQETVADWIRRCDQCAIAKGPRRRTRGKMHQYNVGASFERIAMDIAGPFPIGNAGNKYILVVIDYFSKWPEVYPIPNQEAKTVADIFIKNWICRYGAPLELHSDQGRNFELALFKEVCGLLEIQKTRTTALHPQSDGMVERFNRTLEEHLKKVVDKGQKDWDERLPMFLMAYRSSIHDTTTVTPAKAIFGTDLRLPADLKYGVSVVSETTHADDYMSRKREELADIHELIRRRTQLASDKMKARYDLRANTEGFKEGQLVLLHNPQRKRGLSPKLQTHWEGPYRIVTRINDVVDRIQKYPGNKDVGHACAYPTAWILVKTLITTVLTVTHILEAIRAKVLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -