Basic Information

Insect: Calliopum simillimum
Gene Symbol: -
Assembly: GCA_951812925.1
Location: OX638372.1:56902320-56903760[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.031 3.4e+02 2.7 0.1 14 52 243 285 235 287 0.81

2 5 8.4e-05 0.93 10.9 0.1 22 47 311 336 302 341 0.84

3 5 0.0071 78 4.8 0.0 21 44 338 361 335 365 0.85

4 5 0.00036 4 8.9 0.1 21 43 366 388 363 393 0.90

5 5 0.00023 2.5 9.5 0.2 21 44 394 417 389 426 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.031	3.4e+02	2.7	0.1	14	52	243	285	235	287	0.81
2	5	8.4e-05	0.93	10.9	0.1	22	47	311	336	302	341	0.84
3	5	0.0071	78	4.8	0.0	21	44	338	361	335	365	0.85
4	5	0.00036	4	8.9	0.1	21	43	366	388	363	393	0.90
5	5	0.00023	2.5	9.5	0.2	21	44	394	417	389	426	0.89

Sequence Information

Coding Sequence: atgtcctcaGACGATAGCGATGTCGTCATCTGTCGTTCCTGTATTGAAGAATGCactgaatataaaaatatataccgTCAGGGAGTTGTTATGGGTGAACTGACGACGCTTGCTGCGATGCTTAACTACTGCACTTATTTGGAATTTCAGGAACATGAGGATTTCATGCCCAGTAATATGTGTATTATGTGCACCCAGAATTTAGCCAAACTATATGCTTTCAAACAGCAAGTTGAAAAGGCAAATGAAATTCTGCGCAACCAACATAGTGAACttcaaaatattcaaacagATGAAATTGAGGAATTTCAAGATCTGACAACTGACGACAATGTGGATCATCAAAAGGAGGAAGACATGAATCACGGTTTTGTAACATTAACCGTAATGACAGAAGACCATCCAAATGACGAAGTAAAGGAGGAGAGCGAAATTAAAGAAGTGATTGAATCCAAAGAACAAGAAGTTATTTACGACGAAGAGGAGATCGAAGAAGATAATCAACACTTTAAAGAAGAGGAGGGAGATTATGATACTGAATATGAGATAACTTTTCAAGAGGAAGAAAACAGCGTAGCTGAACACTCCGTTTCTGCTTCTGAAGAAATTGAATATGATATAGAGCCAGATAGTACAGCGTCGTTAGATACAGATCCTGCTAAAATGCCAATAAGAAAAATGATTAGTAAAAACTCAACCATGGCATTTAGACAATTGAGAGCCGTTAAACCGCGTGTAAAAAGCAGTGGAAATAAACCGCTAAATCCAAATTTACAATGTCAGatctGCAACAAACAGCTTAGCAATCCAAACTCTTTGAGTTACCACATGCAATTGCATTCAGATGCGACACCATTTCTTTGCAGTGAATGCGGTGTCGGTTTCAAAACACGTAATGCCTACGAAGGGCACATGTCTATACATGATCCTAATAATCCAAATACGTGTGGTATTTGCGGCAAATCATACCGTCAACCTTCATCGTTGCGAACCCATATGCTAATACATACAGGCGAAAAACCGTTTACTTGTGATATTTGCGGAAAAGGAATGACTCAAAAATCTGGCTACAAGAAGCATATGCTGATACATACCGGCGAAAAACCTCATACTTGTGATATTTGCGGTCGTCAATTTCGCTATTCCAGCAATTTAATAGCGCATAAACGTTATCATACTGGAGAGAAACCGTTTACTTGTGCGATttgtgaaaagtgttttcccTCATCCGAACAATTAAAACGTCATACGCTTGTACATACAGGAGAAAGACCTTTTAGCTGTGACTTATGCGACAAACGATTTAATCGGCGTAGTGTTTTAAATGCACATCGACTAACGCATGTTAAAACGCCCAAATATAGTAGTcaagaattgaattga
Protein Sequence: MSSDDSDVVICRSCIEECTEYKNIYRQGVVMGELTTLAAMLNYCTYLEFQEHEDFMPSNMCIMCTQNLAKLYAFKQQVEKANEILRNQHSELQNIQTDEIEEFQDLTTDDNVDHQKEEDMNHGFVTLTVMTEDHPNDEVKEESEIKEVIESKEQEVIYDEEEIEEDNQHFKEEEGDYDTEYEITFQEEENSVAEHSVSASEEIEYDIEPDSTASLDTDPAKMPIRKMISKNSTMAFRQLRAVKPRVKSSGNKPLNPNLQCQICNKQLSNPNSLSYHMQLHSDATPFLCSECGVGFKTRNAYEGHMSIHDPNNPNTCGICGKSYRQPSSLRTHMLIHTGEKPFTCDICGKGMTQKSGYKKHMLIHTGEKPHTCDICGRQFRYSSNLIAHKRYHTGEKPFTCAICEKCFPSSEQLKRHTLVHTGERPFSCDLCDKRFNRRSVLNAHRLTHVKTPKYSSQELN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00258220;
90% Identity: iTF_00258220;
80% Identity: iTF_00258220;