Csim011193.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638368.1:86782544-86797105[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.064 7.7 8.4 1.3 1 23 1511 1534 1511 1534 0.97 2 13 9.7 1.2e+03 1.6 1.6 1 23 1701 1723 1701 1723 0.92 3 13 0.00072 0.087 14.6 2.8 2 23 1726 1747 1726 1747 0.97 4 13 2.8e-05 0.0033 19.0 0.2 3 23 1755 1775 1753 1775 0.98 5 13 1.1e-06 0.00013 23.5 3.6 2 23 1782 1803 1781 1803 0.97 6 13 8.3 1e+03 1.8 0.4 5 23 1816 1834 1814 1834 0.96 7 13 2.1 2.5e+02 3.7 5.4 3 23 1841 1862 1839 1862 0.93 8 13 0.022 2.6 9.9 0.1 2 23 1873 1893 1872 1893 0.96 9 13 3e-05 0.0036 18.9 0.8 1 19 1899 1917 1899 1921 0.94 10 13 8.8e-06 0.0011 20.6 1.2 1 23 1929 1951 1929 1951 0.98 11 13 0.00016 0.019 16.6 7.6 1 23 1957 1979 1957 1980 0.96 12 13 0.0015 0.18 13.6 6.5 1 23 1985 2007 1985 2007 0.98 13 13 0.0026 0.31 12.8 6.0 1 23 2013 2035 2013 2036 0.96
Sequence Information
- Coding Sequence
- ATGGTGGAGAATATGCAGTGTCCTGTGTGCACTCTATTCCTGCACGCAGGAATGAATCTATCTGATCATTTGGAAACACATCCAAAAGAGCAAGTGATTAAAGCTCTTGTGCAAATGACAATCACTGGTGGTGGACCTGGAACTATCGCAGTCACTGCTGCTTTAGCTGATGATGAGAAGCCAAATGTTGAGACCACTTCCAAGGCGTCAACAAACGAAAAGGAGCATGAGATCAGCACAAACTCAACTAGTAATTCCTCTTCGTCCATACCATCGACTACTTCAACCAACAATAGCTTAAATTTGTCATTTTGCACAccgaaaaaacaagaaaatgttgGATTTGCTACAACCCATTCGACGACAGGAAAGCATATTTTCAACCAACAGAATGTTACATCCTCGCCTGCATATCAAAAAAGTGGTGAGCCTCATGGCATCATTGGTAGTTGCATCAATAACGTTGGCGTTGTAAGGGATATCACGCAAACGCCAACTGATTTTAGTACTATTTCGAGTCGTTAccaacatcagcagcaacaaacaTCAAGTCAATTACATCAGCAGCATGTGGCAGCCACACAACAACGACCACCGCCACCGCCACCTCCACCACTACCACATCTTCCACAACACATTACACAGTTAGCAAACAGCGGAGGATCTCATGGTTTTCAGGCGTTGCCGCAGCAACAGCCACCAATGCTAGCTCATCAACATCAAAATTCTacacatcatcaacatcatacACAGCAAAatcaacaccaacaacagcaacaaaaccaCCATAGACAGCAACATGCTTCTATGCCATTAGCCcagcagcaaaatttaaaaataatatattcgTCCACATtaccaccgccaccaccactACAGCTCTTTTCTTATCAACCTTCAACGCAACCCCAACACCAAAAACCACCACCAGCATATGGAACCGCCATTAGTCAAATACGATCTCAACacaaccaaaataaacaaactctacaacagcaacatcagaTGCAACAACGCACAGCATCGTTGTCAGCAATAGCACCAACTTCAAAACATGAGACTCTCAAACAAAACTTGCCTCCCACCCCCTTAGCAGCAGCTGCaccaatacaacaacaaaagcaatatCAACATCAAGAGACTGTACAGCAGCAGCAGACTCAGCAACAATTCGCCAAGAATTTCGCTGCCAATAACACTTCCTTACCGAAAACAACGGAAACATATCAACAACGCGTTCAGACACCAACAACTACAGTACCATTAACCATTGTTGCAACACCACCTGTCAGTCGTCAAACAGCGTCTCCATATCCTGCAATAATTTCAGCAGCTGCTATAGCTTCGCCATCTTCGTCATCGGTTTTGCGTTATGCAGAATCGCCAGTTACTGCACATTATTTGGAACGCGAAAATGGTGATTTTATAGTGCAAGAAATTCCAAAACATATTGTAGAATGCGTTGAAAAAGATAATGGAGAATTTTCGGTAATTGAGCGCATTCATCAATCGCCGCCAAGTGTCCTGCACAtacatgatgatgatgacgaagaCGACAATATTGAAGATGGAAGTGATAATGCCAGCGATGGTGAtggtaaaatatttgcaaatgaaGAAACAGCTAACAAATCTATTAAAGACGATGAAAAGAACaacgaacaacaacaacaagaggaTGATGAAGAGTTTATGAGCGTTGACAGTGATAATAGCGATATGGAGGATTCTTTGGAGAAATCATTTCCTAAAGCAAGTGTAAAACTCTGTAAAGACAACGCAACCTGTAGCACGCCGTTGGAACAGACTATAGTCAATTCCGCTATCAGTAGCAAAATGAGTGATGCAAACTCCAATTCGAATTCAAACTCCACCACAACTACCAATAATAATTCAGGTCTTACACCACGTAAAAAATCTTCGAAAAATACAATTACCGTTTTAAGTGATGTgcaattgaatttaaatgaatatttggATTTGGTTGGTAACATAATTGCATCAAGTAAAATTGCACAAAATCGTAATACGTTTTCTGACGCTACTGCAGCAATACCGTTGCTTAAAGTCGAAAAGGTCGAACCATATGATGAGTATGAACAAAATGAGATTGCAGAGAATATGACCGTAATAGAGAGTGTTCGAATGGAAGCTACAAGTTTAATGGAACCACCTAAAACCACCAATAACAAAGATAACATAACTGAGACTGATGAAttaattgcaaataaatttaatagtaaTAAGTCTTCTCTAAATGAAACATATATTAACAAAGTCGCAACTACTACTGCGTCAGAAGAAAGCAAATTGcacgaaaagaaaaatgttgcagcaaAATGTTCCGGTCATGCAACAAGCGTTATACGAATGGCAACAACCAATACCGCTAGTCAACCAATATTGCATGAAAATGATCAGCTTCCTTCCAGTGTTGTGGATATTGTTGCTGATGTAGAGAAGAAAGGGGTAAATCATTCAACTAATATGCGATTACAGcaggaaaaatttcataacgcCGAAGATTTGTctcaagcaaaaattaaaaatgaggtGACAACTGAAGATATTCTACAGAAAACTCCACCACCACCAATTCAATTACCTCCGTTAAAAAAGGGTCCAAAGAAGCTTGtcataaaaccaaaattaaacaaGACTGATGCTAATAATGTAAAGGCGGCGGCTACAAAAACAGCTGATGATAAATTAATTTCTGATGAACAGCCAACAACTTCAgcaaaagcacaacaaaaaattcagcttgataaaatcgaacaaaCAAAGACAATGGAACAGGCAATGCATCCAGATGACACAGATGGCAATGTTGTTATAAAGTGTGAGCCATATTCGATTACAGAGCAAACAAGTATTTTGGAGCAACACTTAAAACAGGGCTTGCAGCAACTTGAGTTCAAAGAGGAACAGTCTTCAGCACgtaatgatacaattttctCATTAgatagccaaaaaattaaaattaaacgtGAAAGCGATGAATTCAGTGATGTGCCAAATATTTATACCGACTCAAATGAAGAAGAATATTCTTCGTGTGTAACGCTGCCAAATGTCACAGAAGATGCGCGTGTATTATTGAATTTTGCTAATTCGAAGAAAAGCAAAACTGATGCCGCTTCAACGACCGTGTCATTTCCATCGTCTAATTCCATTTTTGCAGGTTCTTTGattgaaaaatcaatttcgactAATGCTACTTGTTCATCATCATCAACGCAAAATGCAGCAGGGACATCGATCACAACAGTTGcagcaaatttttcaacatctaATTCTGCGTCGGCTGCTGCTTTGTCAACTCTTCGCTGTGATGATGAATTTATTGTTCCCGATGCCACCGATGTTCAAGAGATAGTTATATCATCATCATATTCATCACAGTCCGCAACTGATATTGCACTAAATAACTGCAATAATGTCACGGTGACAGATCAACACCAACACAATTTCTCAGATTATCCTTTTAGTTTTCTTTATGGTGGTGGCAGCGTTGCTCAACAAATCGAGACAAAGGGTAATTTCTCTCCAATATATCAGCATCAGCCACATGATGCCACAACAGCTGCTACGCTCGCTTCTGGTAGCAATTCGGTTACAATTGAAGAATTCACACCGGTACAGAACAGCAGCCAACACCAGCAACAGCAACGATATCATGCACATGCTCCAGTAGGCGCTGGACAATGGTATCATGCGGTTTCAACTTCAAATGCCGATTTCGAGGCTGCTTTGGCAGTCGATTGTGGTGATGCTGAGaatgatgttggaaaatattTAGACTTAGACTCTTGCAAACGTGACAATATGACAGCAGCTCAGGCGGCGCCATGTTCCTCAACTTCGTCTTTTGCTGCGGCAACAGAGAGTAGTCTGGCAGGTTGCACCACAGATGCTTTGAATATTCGAACTGATGAAAAGATGCCTGCTAAAGGCGAAATATCGGAACAAGAGAGTAATTGTGATATTGAAAATTCATGGAGTCAACCTATGTATGGAGATATTCCTGCACGTTTCTTTAAGACATCATTTCCTGGGCTTTTCCCTCAGGATAATTGGAATGGTGAAGAATATTTCACTGTTCATGACTTAAGCGCATCAGCAGGCACAACAAGTGCCAGTAACAGAGCTACCAAAagttttgattTTCGTCTTCCGATGGAAACGACAGCAACAACCACAGCGGCCGGTGTTagtatgcaacaacaacaatgtactGAACATCTCCCATCTTCGTCAAAGAAGAAGCGAAAGCGTGACTCAAATATTGCTAAAAGTTCAACAGCAACATCGAGAAAAGTTGCTGCAACGGTTACTTCACAAGATTTATTCTTACAACAACaaaggcaacaacaacatcaacagcagcaactaCAATTCTATAATCAGCAACCAACAACATCTGCAGCAATATTGGCTGGTCCATCAACTGCTGCCGCCGCATCTTCTTCAGTTGCTGCTGCTACAGCAGCCGCAGCTGTTATACAAAAGCAACAACGTAAAAAGATCTATCAATGCGCTCATTGCCCATTACAGTATACTAAACTGAAGGACCGTAATTCACATATGATCGTACAACATAATTATGTGCGTCAGAATCGTCGTCTGGTATCATTACAAACTGTGGCAGCAGCAACTGTTACTACAGCCACAGCAACAACAGCTTCTGCTGAAAATTTGGCGACAATACCTTTTAATGGAGCTAGTGGCAGTTCAAATATTTTAACCATTCCACTACCGaactttgttgaaaatataGAAGATTCGAAGCAAGGTATTGTCAAAATAGAGATGGAAAACAACGCCGATCAAGCAGTTGCTTCAATGTCAACAGTTGAAAATATTATGGCGAAATCTGAGCTGGTAGATGATAAAGATAGCTTAGCATTAATGCCTACCACCAGTAGTACACCCAATGCAGTTGTTGATTTGAAACCACCAAACGTTCGTCCTCTAGCTTTGACGCATGCGGCTAAACTTGCTACACTTTACCGTATGCTGGTTTCATTTAATATATCTACCTTGAAGCAAAATTCAAATATCTCTGAGGTCGATGAAAAACTTATGGAATCGTGTATTTTCTTCTGCTATGTTTgtcgtcaaaattttaatactgTTAAATTTTATGATGCACATTTGACAGAACATCCGGCTGAATGTTTTACATGCGGAAAGAAATTTCAACGTTGGAAGAATTTTTCGCTGCATTTAAAACGTCATTTAGGCTGGAAAGAATTCGGTTGTAATGTATGCGATAAAAAGTTTGTTGTACGCAGCGCGTTGGTTGAGCATATGAGAATGCATACTGGATTAACACCACTGAAATGCAAGATATGCGGCAAAAATTTCAAGCGGTATTCAAATCTAACACAGCATCGCAAACGCCACGGTAGgcaaatattgcgaaaaaaagaatttgtcTGTCACTGCGGCGAAGTGCTACCATCAAAAGCACGCTTTTTATGGCACAAAGAAACACACGATGCTAAGCCAAAATGTTGTCCCTATTGTTGTGATCGATTTGTGCATGCAAACTCTTTGCGTCGCCATATACGCCTTGCCCACTCAGATAAATTTGATTACACCGAACCCATGGAGTGTCCCATGTGCAAGCAGGTCTTTGCCAAATCGTCCATTAGAGCACACATGGCAACGCATTCGATGGATACACAACATGATTGCCCCATTTGTAATAAATCTTTCTCAACAAAATGGAATCTAAAAATACATTCATGGGTGCATGCTAACCGCACCGCTAAACCATTTAAATGCGAGCACTGCCCAAAGGCATTCGTGCGTGAAGTGGActttaaaaatcatatgaatGCACACAAACAGATCAAACCCTACACATGTGAGTATTGCGGTTGCAAGTTTATACGCAAATACAATTATATGCGTCATCGGCGTGAGCATCATGGAAATAAGAAATTCACCTGCGACCTCTGCAAGAAATCGTTTCACCGTCACTACTATTTAATTGAACATAGACGTATTCACACCGGTGAACGACCGTTCCAGTGTACGATTTGTGGAAAGAGTTCAACAACAAAGACTAATCACAACAAGCATCTAAAAATACATCATTCGCGAGATCCATTTACAGTTGAAGCCTAA
- Protein Sequence
- MVENMQCPVCTLFLHAGMNLSDHLETHPKEQVIKALVQMTITGGGPGTIAVTAALADDEKPNVETTSKASTNEKEHEISTNSTSNSSSSIPSTTSTNNSLNLSFCTPKKQENVGFATTHSTTGKHIFNQQNVTSSPAYQKSGEPHGIIGSCINNVGVVRDITQTPTDFSTISSRYQHQQQQTSSQLHQQHVAATQQRPPPPPPPPLPHLPQHITQLANSGGSHGFQALPQQQPPMLAHQHQNSTHHQHHTQQNQHQQQQQNHHRQQHASMPLAQQQNLKIIYSSTLPPPPPLQLFSYQPSTQPQHQKPPPAYGTAISQIRSQHNQNKQTLQQQHQMQQRTASLSAIAPTSKHETLKQNLPPTPLAAAAPIQQQKQYQHQETVQQQQTQQQFAKNFAANNTSLPKTTETYQQRVQTPTTTVPLTIVATPPVSRQTASPYPAIISAAAIASPSSSSVLRYAESPVTAHYLERENGDFIVQEIPKHIVECVEKDNGEFSVIERIHQSPPSVLHIHDDDDEDDNIEDGSDNASDGDGKIFANEETANKSIKDDEKNNEQQQQEDDEEFMSVDSDNSDMEDSLEKSFPKASVKLCKDNATCSTPLEQTIVNSAISSKMSDANSNSNSNSTTTTNNNSGLTPRKKSSKNTITVLSDVQLNLNEYLDLVGNIIASSKIAQNRNTFSDATAAIPLLKVEKVEPYDEYEQNEIAENMTVIESVRMEATSLMEPPKTTNNKDNITETDELIANKFNSNKSSLNETYINKVATTTASEESKLHEKKNVAAKCSGHATSVIRMATTNTASQPILHENDQLPSSVVDIVADVEKKGVNHSTNMRLQQEKFHNAEDLSQAKIKNEVTTEDILQKTPPPPIQLPPLKKGPKKLVIKPKLNKTDANNVKAAATKTADDKLISDEQPTTSAKAQQKIQLDKIEQTKTMEQAMHPDDTDGNVVIKCEPYSITEQTSILEQHLKQGLQQLEFKEEQSSARNDTIFSLDSQKIKIKRESDEFSDVPNIYTDSNEEEYSSCVTLPNVTEDARVLLNFANSKKSKTDAASTTVSFPSSNSIFAGSLIEKSISTNATCSSSSTQNAAGTSITTVAANFSTSNSASAAALSTLRCDDEFIVPDATDVQEIVISSSYSSQSATDIALNNCNNVTVTDQHQHNFSDYPFSFLYGGGSVAQQIETKGNFSPIYQHQPHDATTAATLASGSNSVTIEEFTPVQNSSQHQQQQRYHAHAPVGAGQWYHAVSTSNADFEAALAVDCGDAENDVGKYLDLDSCKRDNMTAAQAAPCSSTSSFAAATESSLAGCTTDALNIRTDEKMPAKGEISEQESNCDIENSWSQPMYGDIPARFFKTSFPGLFPQDNWNGEEYFTVHDLSASAGTTSASNRATKSFDFRLPMETTATTTAAGVSMQQQQCTEHLPSSSKKKRKRDSNIAKSSTATSRKVAATVTSQDLFLQQQRQQQHQQQQLQFYNQQPTTSAAILAGPSTAAAASSSVAAATAAAAVIQKQQRKKIYQCAHCPLQYTKLKDRNSHMIVQHNYVRQNRRLVSLQTVAAATVTTATATTASAENLATIPFNGASGSSNILTIPLPNFVENIEDSKQGIVKIEMENNADQAVASMSTVENIMAKSELVDDKDSLALMPTTSSTPNAVVDLKPPNVRPLALTHAAKLATLYRMLVSFNISTLKQNSNISEVDEKLMESCIFFCYVCRQNFNTVKFYDAHLTEHPAECFTCGKKFQRWKNFSLHLKRHLGWKEFGCNVCDKKFVVRSALVEHMRMHTGLTPLKCKICGKNFKRYSNLTQHRKRHGRQILRKKEFVCHCGEVLPSKARFLWHKETHDAKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQVFAKSSIRAHMATHSMDTQHDCPICNKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVREVDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDLCKKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972539; iTF_01486635;
- 90% Identity
- -
- 80% Identity
- -