Basic Information

Insect: Calliopum simillimum
Gene Symbol: -
Assembly: GCA_951812925.1
Location: OX638372.1:95345432-95366627[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.4e-07 2.8e-05 25.5 1.6 2 23 154 175 154 175 0.97

2 9 1.4e-06 0.00017 23.1 1.6 1 23 181 203 181 203 0.98

3 9 2.9e-07 3.5e-05 25.2 0.7 1 23 209 231 209 231 0.98

4 9 8.2e-06 0.00099 20.7 0.5 4 23 242 261 237 262 0.92

5 9 8.4e-05 0.01 17.5 2.9 1 23 267 289 267 289 0.97

6 9 4.1e-05 0.005 18.5 3.6 1 23 295 318 295 318 0.98

7 9 7.3e-05 0.0088 17.7 3.0 1 23 324 346 324 346 0.98

8 9 5e-06 0.0006 21.4 1.1 1 23 351 373 351 373 0.98

9 9 0.00093 0.11 14.2 0.3 2 23 380 404 379 404 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.4e-07	2.8e-05	25.5	1.6	2	23	154	175	154	175	0.97
2	9	1.4e-06	0.00017	23.1	1.6	1	23	181	203	181	203	0.98
3	9	2.9e-07	3.5e-05	25.2	0.7	1	23	209	231	209	231	0.98
4	9	8.2e-06	0.00099	20.7	0.5	4	23	242	261	237	262	0.92
5	9	8.4e-05	0.01	17.5	2.9	1	23	267	289	267	289	0.97
6	9	4.1e-05	0.005	18.5	3.6	1	23	295	318	295	318	0.98
7	9	7.3e-05	0.0088	17.7	3.0	1	23	324	346	324	346	0.98
8	9	5e-06	0.0006	21.4	1.1	1	23	351	373	351	373	0.98
9	9	0.00093	0.11	14.2	0.3	2	23	380	404	379	404	0.95

Sequence Information

Coding Sequence: ATGGAAAGCATTTGTAGGCTTTGCTTTCAACCAGCAGCGTTGTTTCAAGTACCCGGTTACAATATTCCCACATGTGTTAAGTGCTCTGAACATTTGACTACCAACGGCTTTTATCAGACGGTGCGCCAAGACGGCACCACTTTGGccacaacatcagcagcagcagttgtAAATCAATTGACTAACGGTGGCAACTtaacacaacaacagcagcagcaacaacaacagcaacaacaacagcatcaacaacaacagcagcaacaacaacagcaacagctacAATCAACAAGTTCTTCCGAAAATTTACAATCACAAGACGATTCTGAAGATaTAAATAAACAGCGAATTGGTTCGATCCAATCCAATCAAAACGGtgtgaaaaaaaccgaaaccaTGTCCTTTGATTTGGAGAAAACCATACAGAATCTAGACGTGGATTTAATATTCAATGAGGAGGGCTCCTGTCCTCTATGCAACAAAACTTTTTCGCGTAAATCTTCGCTATTAACTCATATCCGAAATCATGCTGCGGaacgaaaatttgtttgtaactTCTGTCATAAGGgtTTTACACAAGCAGCAAATTTGCGTAACCACGAAAGGATCCATACCAACGATCGTCCCTATGTTTGCGTTGATTGCGGCAAAACATTTACTCAGATAACAAACTTGAATAATCATCGCCGCTTGCACACTGGAGAAAGACCATTTGTATGCATCGAACCGGAGTGTGGACGCTCGTTTGCGCAGGTCACAAACCTTAATAACCACATGAAAACTCATCACAAGGTACAACAATATTGTTGCAATCAATGTCCGAAGAAATTTACACAAGTCACTTCCTTAAATCAACATCTGCAAGCACATGCCGGCATAACTGGCTACTATTGTCCACGTTGCCCGGAAAAGACATTTAAACAGCAATCACAATTACACACTCATATGAAGTCTCATGGATTAGCGTTTCCATTTGAATGTAGCAAATGTGATGAGAAATTCCGGCAACAAGCACATCTTGATCAGCACAATAAAATGCatgatgaatttaaatttaagtgcAACATTTGTCCATCATCATTTAATCAGGAATCGTTGCTCAAAAAACATGTGCAACGGCATGTCGAGGGAAGATACTTGACTTGTCCTGTGGCCAATTGTAACGAAGCATTTGCCGTGCGTCAACATTTATCAAAACATTTGCTGACAAGCCATTCACATGATGAGTTGCCGCCACCGAAACGCTCCAAAAAGTCGATAACATTACAACCGCCACAACAGCCGGTGACGATGATTGGACAACCGCTATCAATACAACATACAACGGGTCAACGCGGTCGTCcaccgaaaaataaaaaagcccAAAATGCAGCCGCCAACTCATCTGCAATTAAAGTTGAAGTACATGAACCTTTGCACAATCAGCATATAATCAGTAATGCGAGCGGTCTATCCATACAGCAGCAGATCAATCAACatatgcaacagcagcagcaattacaacaacaacaccaacaacaacagcagcagcagcaacaacatcaaatgCCAATTGGTGGCAATAATGTGAAAGTGCGTTTTAtacaaacgaaataa
Protein Sequence: MESICRLCFQPAALFQVPGYNIPTCVKCSEHLTTNGFYQTVRQDGTTLATTSAAAVVNQLTNGGNLTQQQQQQQQQQQQQHQQQQQQQQQQQLQSTSSSENLQSQDDSEDINKQRIGSIQSNQNGVKKTETMSFDLEKTIQNLDVDLIFNEEGSCPLCNKTFSRKSSLLTHIRNHAAERKFVCNFCHKGFTQAANLRNHERIHTNDRPYVCVDCGKTFTQITNLNNHRRLHTGERPFVCIEPECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLAFPFECSKCDEKFRQQAHLDQHNKMHDEFKFKCNICPSSFNQESLLKKHVQRHVEGRYLTCPVANCNEAFAVRQHLSKHLLTSHSHDELPPPKRSKKSITLQPPQQPVTMIGQPLSIQHTTGQRGRPPKNKKAQNAAANSSAIKVEVHEPLHNQHIISNASGLSIQQQINQHMQQQQQLQQQHQQQQQQQQQHQMPIGGNNVKVRFIQTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00624929;
90% Identity: iTF_01486521;
80% Identity: -