Csim027021.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- retn
- Assembly
- GCA_951812925.1
- Location
- OX638370.1:113546460-113566648[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-17 4.9e-13 50.5 0.1 29 89 4 62 1 62 0.93 2 2 1.4 7.4e+03 -1.3 0.4 74 75 201 202 172 242 0.58
Sequence Information
- Coding Sequence
- ATGGCCAAATCTGTACTGGATCTATATGAGCTTTACAATTTAGTTATAGCACGTGGTGGTCTGGTTGAtgttatcaataaaaaattatggcaAGAAATAATAAAAGGACTTCATCTGCCGTCGAGTATTACAAGTGCGGCCTTTACGCTGCGCACACAATATATGAAATATCTATACCCATATGAGTGTGAAAAGAAAAACCTTAGTTCACCAGCCGAATTACAAGCAGCCATCGATGGTAACAGACGTGAAGGACGACGTTCCAGTTATGGACAATTTGAGGCGATGCATAATCAAATGCAAATACCTCAAATGGGACGTCAAGGATTACCTGGTGCCATGCAACAAATGTCACCACTGGCTTTGGTCACACATGCTGCCGCTGCGAATAGCCCACAAGCACAAGCcgcagcagctgctgctgctgctcatcATAGACTGATGGCACCCTCATTCGGGCAGGTGCCAAATTTGGTAACGCACGAAATTGAGCAACGTATGATggaatatttaaaattgatacAGGGAAAGAAAGAGCCGGTTGCTGCAGCGCTacagcaacatcagcagcagcaacaacaacaacagcagcaacagcaacaacaacagttgcagcagcagcagcaacatcagcgTCAACGTTCCCAAAGTCCAGAGATAACAACACGTGAAGCATTAAATGCATTGGAAATGTCACGTGTTGCACTTTGGCAAATGTATCACAATAACACAAGTCCACCGGCTTCAGTGAATACCTCACCACAGGGAGGTGGTGTTGTTGGTGCTGTTAGTAGCAACAACAATGTTGGCGCCGCTGAGCCACAACGACATCCACCACGTTTTCGTTCTAGCAGCGAAGCCCTCAACCTTTCCGAATCACCACCGAATCTCAACACAACAGCCATCAAACGTGAGCGTGACCGCGAACCAACACCCGAACCAGTGGAACGTGATGATTTTCACCATTTGCCACCGCCAGCCAAACGTGGTGGCGGCAGCAGTGGTGGCACAATGACCAGTGGCGGCGCTATTGTACCGCCTGGTTTTCCAGCGAATTTCTATCTACCGCCAAGTATGGCCAATGCAGCTGCCAATTTCCATCATGCAGCCGCTGCGGCGCATCTTccacatcatcatcagcatgaATCCGATGGTGAGGAacacgatgatgatgatgaagacgaGGGAGGAGAGCACAATACAACAATGAATTCATCGAATGATGATGAAGGACATCAACAGGAGCGAAAACAAGTGAATGGCCATcatcaccagcagcagcagcaccaccaccaccatcattATCAGCAACTGCAACATCATCTGCATCACAATGAACGCCATCAACTTGATAAGTCTGACGATTCTGCTATTGAAAATTCACCCTCAACATCTGCTTCTGCTGGAAATGGTCATAGTTCACCCGTTTCAACGAAAAAGATTCATCTATCGAAGCAACAACAATCAGCGTCGACGATGCAATGGAGAGacaaagcaacagcagcaacagcagttgATGAGAGAAGCACAGCAAATGGAGGTGGTGGTGGAAGTGGCGCTGTTGCCATTAGTCCATTGGAACAGTTGAGTTTGCTGTCGGGTATGCAGTTTCGGGTGACACGAAATgGCACTGGCGCTAATGGTGAACAGCAGCTAATTGTAAACCTTGAATTAAATGGTATCAAATACTCTGGCGTACTTATTGCCAATGCAGGAACAGAAGCAGCATCGGAAGCATCAGCAATAGGGTCAACTGCAAAAAGCAGTCGGAATAAATTGAATGCAGATGATGATGCAGCTGATGATGATGTTTCAGCACCAACAGACATGGATATACCAACATCGCCAAGAgcgaaaaatacaacaacagtcGCTGGAAAATCGTTAGACACAACGATGggagcagcagcaacaagtaaaataacaacaaacagcATGGATACCAGTAGTGCTGCAGACACCGGAACTACAACTGCAGCAACGAcagtaacagcaacaaaatcCGCTGCACTTAAGCTAACAAATGGACCCAGCAGCAACGCATTAAAGGATTCGCTATTAAGTTCATAA
- Protein Sequence
- MAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSSPAELQAAIDGNRREGRRSSYGQFEAMHNQMQIPQMGRQGLPGAMQQMSPLALVTHAAAANSPQAQAAAAAAAAHHRLMAPSFGQVPNLVTHEIEQRMMEYLKLIQGKKEPVAAALQQHQQQQQQQQQQQQQQQLQQQQQHQRQRSQSPEITTREALNALEMSRVALWQMYHNNTSPPASVNTSPQGGGVVGAVSSNNNVGAAEPQRHPPRFRSSSEALNLSESPPNLNTTAIKRERDREPTPEPVERDDFHHLPPPAKRGGGSSGGTMTSGGAIVPPGFPANFYLPPSMANAAANFHHAAAAAHLPHHHQHESDGEEHDDDDEDEGGEHNTTMNSSNDDEGHQQERKQVNGHHHQQQQHHHHHHYQQLQHHLHHNERHQLDKSDDSAIENSPSTSASAGNGHSSPVSTKKIHLSKQQQSASTMQWRDKATAATAVDERSTANGGGGGSGAVAISPLEQLSLLSGMQFRVTRNGTGANGEQQLIVNLELNGIKYSGVLIANAGTEAASEASAIGSTAKSSRNKLNADDDAADDDVSAPTDMDIPTSPRAKNTTTVAGKSLDTTMGAAATSKITTNSMDTSSAADTGTTTAATTVTATKSAALKLTNGPSSNALKDSLLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485954;
- 90% Identity
- -
- 80% Identity
- -