Cvir012630.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calephelis virginiensis
Gene Symbol
-
Assembly
GCA_002245475.1
Location
NJDC01002559.1:94998-105375[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.021 1.9 9.7 4.0 1 23 676 698 676 698 0.97
2 9 9.4e-05 0.0084 17.1 1.0 1 23 746 769 746 769 0.97
3 9 0.001 0.091 13.9 0.5 2 23 775 796 775 796 0.97
4 9 3.9e-06 0.00035 21.5 3.3 1 23 803 825 803 825 0.98
5 9 7.5e-05 0.0067 17.4 0.2 3 23 832 852 831 852 0.99
6 9 4.5e-06 0.0004 21.3 3.1 1 23 861 883 861 883 0.99
7 9 0.00025 0.022 15.8 0.3 3 23 891 912 889 912 0.97
8 9 2.6 2.3e+02 3.2 0.2 2 13 919 930 918 941 0.80
9 9 0.14 12 7.2 3.6 1 23 949 972 949 972 0.95

Sequence Information

Coding Sequence
ATGTTGCATAACACCGGGCCGTTTGGGCCTAACGAGGCGCCAATAAATGCTAGTGGTCAAGCAAATATGTCTGATATGACTGGTCAGATGAACATTACGAATATTACTAACAATTTGACAAAAATTGGGCCGCAGTCGTCGCACCCAGTGAATTCACACTTCAATTTACCTGACTACGCTAATTACGGTCTTAATATGAATGCTGCTATgaataattttcacaatttcCATCAATCGGGGTATCAACAAAGTTTGATGCATAACGCTTCTAATTCGTGGCAGAATTCCATGTTACCGATGAATTTAAACGCTCAGAGTGACTCCCATTCCATGCTTGGGTATTATGAAAAGAAATTTGAGCCGCAAAATGAGATaagtgaacaaaattttaacaaaagcaTGTTAAATATACCTCAAGTTTACACAAAAGCACTACATAAGCATTTAGGTATGGATACTCAATctgattattataatttcaataattatctaGATCACAATCTTGATTTATGTGTTCGTTCACAAAAAACTGACTCACAAAATGCTTTAGACAGGCTAAACTTACAACATAAATCCCGAATACCCCCATTCCCTGAGCAGGTTGATTTAAGTCGCACTAAGACTGTGGAAAATCAGAATACAAGTGTGAGAAACTTATTAGAAAATCAGCTGAGCTCTAGAAACATGCTTCATCAAAAATTGGATAGACCAGATTATCCTTATCAATATGAACTGAGCCATAAACCTAAAAGCCATGATTATCACAACATTGATGCTAGAATGAGTACTCATCATAAATCACCGCCTATTTATTCACAACATCAGAGCTTACCTCCAAAAGATAtagaaacaaatacaaattcTAGAAACCCTCATGAAATTCCAAGTTTCACTGAACAGATGGATCTTAGTTGTAAAACTGCAGATCCAAATAGTAGATTGGCATTAAAGCTACAGAAAGATCAATCTTATTATCCAGAAGAAGTTGACTTAAGTAGTCGCtctaaaaatattgatagcCATACAAGTAGTCAACAGGTAAAAGCTGATAAATTACCATATTATGACCAAATTGATTTTAGTCGTATAAAAGATATTAGTTCTCAATCTCAGAAGGATGACAAAGTACATTTTTATGATCAAGTTGATTCAAGTCATGCCAAAATTATAACTACAGATAGGCTTAATTTAGAACCCTCTAATTTAGAGGAAACACCATTGGAAAACCCAAAGACACCCAAAACTGATGATCCAGAAGAAATAGCTTTAAAACCAATAGGAGATAGTACTGAAAACAATCCTCAAAAAGTCATGGAGTCAGTACAGATGGAGATAGAACAAGATGTGatacaaaatatgtcaaatGAGAAAGAAGAACCAAAATCCCCTAATCCAGTCAAAGAAATTGAAACTGATACAAATGTCAATTTAGACCTAACTACCAAACCACAAGAACCTCCAAAAGACAGCTTAGAGAATCGCCCCATTCCTAATTACTCAAATGAACAAAGAAGACGTAACTTAGCCAATACTGTACGTATGATAGAAAATATCCTTATTCAAacaacaaagaaaaaagaaacGGAGACTGTAAATACAGATGTTAACcctaatgatgatgataaaattgatgAGCAGTCCAAAGATGATGATAGTCAGAGCATTCAAAGTGTAGATCACCTTAGTGATGATCATTCAATAAGTAGTACAGATGCAAATGAAAATGATACATCAAATTATGATGATAATTCTGGTAAAATCACCTTGAAAGACATTAAACAAGAGTGTCTGTCTGAACCAGAAACAGATGTTGTAAACatcaaaaaagagaaaatagaTGATGTTGTGGTCAAAGTAGAAATATCGCCAGATTTCATTGATATGGATAACTTGAATCCGTTCCAGAAAGATAGTTTTGGAGTGCATAGTGAAGAGGTTTGCAATTCAGAGGTTCATGATGCCGAAAATAGTATAGCAATTGCTTTATACACTATTAAAAATGaaactcgACAAAATGACTGTTATTATGAGTGTCCACATTGTAGTTTATACTTTTCACATCCAAAGAGATTTCTGATCCATACAAAGTGGCATTCCTTTGGTCTAACTAATGAAAAAAGAATGGAGTTCCAAAGGGAAAAACTGATGAGGAAGACTATGAGACGGGAGGCAAAAGTCCTTGAAAGGATGCACCAAAATGAAGTCACAGAGGTGgagaaagttgcagggaaaacatATACTTGTGGTGAATGCGGCAAGGTGTTTTTGAAAAAGGCCAGTCTACAAAACCATAGACAAAGGTATCATCCTACTCGACCACGCGAATGCAAGATATGTGGCAAACTGTTGGTGGGATGGTCACAGCTACGGGATCACCACCTCACTCACTTCTCCGAGGCCGGCTACTACCAATGTGATGACTGCCCCAAGAGGTTCAAATACTCTCACTCTCTGGCTAAACATAGGGATACACATTTGGAAAAAACCCATGGATGTCCAAAATGTACTAAGATGTTCGGTTCTGCGGCCCTTCTCAATGTACACTTGAAGACGCACGAGCGAATGTTGCGGGGAGCTACATTCAGGTGTACCTATTGTGGGAAGGGATTTTTCGAGAGTTACCATTTACAAGCCCATGAACGTACTCACCGCAACGAGAGACCGTTTGGATGCGAGTTCTGCAAGACGGCGTTCGGCACAAAGTCTGGACTGGCGAGGCATCTAAGAGTGTCGCATAGCTCCGCAAAACCCTGGGAATGTTCGACGTGCCGTCGCTCTTTCGTATCCGAGGGGATCCGAGACCGACACGAGATGAGGAACCACGGGAACCCAGAGGATTTTAAGTTCGTCTGCAAGCAGTGCCCCTGCCGGTACATGAAGATGAAGGACCTCAGGAAGCACGTGTATAAGGTCCATCCGAAAGGGAGACGGAAGAAGAAGTCCGAATCCGACACTGATTAA
Protein Sequence
MLHNTGPFGPNEAPINASGQANMSDMTGQMNITNITNNLTKIGPQSSHPVNSHFNLPDYANYGLNMNAAMNNFHNFHQSGYQQSLMHNASNSWQNSMLPMNLNAQSDSHSMLGYYEKKFEPQNEISEQNFNKSMLNIPQVYTKALHKHLGMDTQSDYYNFNNYLDHNLDLCVRSQKTDSQNALDRLNLQHKSRIPPFPEQVDLSRTKTVENQNTSVRNLLENQLSSRNMLHQKLDRPDYPYQYELSHKPKSHDYHNIDARMSTHHKSPPIYSQHQSLPPKDIETNTNSRNPHEIPSFTEQMDLSCKTADPNSRLALKLQKDQSYYPEEVDLSSRSKNIDSHTSSQQVKADKLPYYDQIDFSRIKDISSQSQKDDKVHFYDQVDSSHAKIITTDRLNLEPSNLEETPLENPKTPKTDDPEEIALKPIGDSTENNPQKVMESVQMEIEQDVIQNMSNEKEEPKSPNPVKEIETDTNVNLDLTTKPQEPPKDSLENRPIPNYSNEQRRRNLANTVRMIENILIQTTKKKETETVNTDVNPNDDDKIDEQSKDDDSQSIQSVDHLSDDHSISSTDANENDTSNYDDNSGKITLKDIKQECLSEPETDVVNIKKEKIDDVVVKVEISPDFIDMDNLNPFQKDSFGVHSEEVCNSEVHDAENSIAIALYTIKNETRQNDCYYECPHCSLYFSHPKRFLIHTKWHSFGLTNEKRMEFQREKLMRKTMRREAKVLERMHQNEVTEVEKVAGKTYTCGECGKVFLKKASLQNHRQRYHPTRPRECKICGKLLVGWSQLRDHHLTHFSEAGYYQCDDCPKRFKYSHSLAKHRDTHLEKTHGCPKCTKMFGSAALLNVHLKTHERMLRGATFRCTYCGKGFFESYHLQAHERTHRNERPFGCEFCKTAFGTKSGLARHLRVSHSSAKPWECSTCRRSFVSEGIRDRHEMRNHGNPEDFKFVCKQCPCRYMKMKDLRKHVYKVHPKGRRKKKSESDTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00256274;
90% Identity
iTF_00256274;
80% Identity
-