Cnem005294.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calephelis nemesis
Gene Symbol
-
Assembly
GCA_002245505.1
Location
NJDD01004886.1:125871-135008[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.022 1.9 9.7 4.0 1 23 681 703 681 703 0.97
2 9 0.0001 0.0084 17.1 1.0 1 23 751 774 751 774 0.97
3 9 0.0011 0.092 13.9 0.5 2 23 780 801 780 801 0.97
4 9 4.1e-06 0.00035 21.5 3.3 1 23 808 830 808 830 0.98
5 9 8e-05 0.0067 17.4 0.2 3 23 837 857 836 857 0.99
6 9 4.8e-06 0.0004 21.3 3.1 1 23 866 888 866 888 0.99
7 9 0.00026 0.022 15.8 0.3 3 23 896 917 894 917 0.97
8 9 2.7 2.3e+02 3.2 0.2 2 13 924 935 923 946 0.80
9 9 0.15 12 7.2 3.6 1 23 954 977 954 977 0.95

Sequence Information

Coding Sequence
ATGTTGCACAACACCGGGCCGTTTGGTCCTAACGAGACTCCAATAAATCCTAGTGGTCAAGCAAATATGTCTGATATGACTGGTCAGATGAACATTAGTAATATTACTAACAATTTGACAAAAATTGGGCCGCAGTCGTCGCACCCAGTGAATTCACACTTTAATTTACCTGACTACGCTAATTACGGTCTTAATATGAATGCTGCTATGAATAATTTTCACAATTTCCATCAATCGGGGTATCAACAAAGTTTGATGCATAACGCTTCTAATTCGTGGCAGAATTCTATGTTACCGATGAATTTAAACGCTCAGAGTGATCCCAATTCCGTGCTTGGGtattatgaaaagaaatttGAGCCACAAAATGAGATaagtgaacaaaattttaacaaaagcaTGTTAAATATACCTCAAGTTTACACAAAAGCCCTACATAAGCATTTAGGTATGGATACTCATtctgattattataatatcaacaatttcaataattatatagatCACAATCTTGATTTATGTGTTCGTTCACAAAAAACTGACTCACCAAATGCTTTAGACAGGCTTAGCTTACAACAAAAATCCCGAATACCCCCATTCCCTGAGCAGGTTGATTTAAGTCGCACTAAAACTTTGGAAAATCAGAGTACAAGTGTAAGAAACTTATTAGAAAATCAGCTGAGTTCTAGAAACATGCTCCATCAAAAATTGGATAGACCAGATTATCCTTACCAATACGACCTGAGCCATAAACCCAAAAGCCAAGATTATCACAATATTGATGCTAGAATGAGTACTCATCAAAAATCACCTCCTTTTTATTCACAACATCAGGAGAGATTACCTCCAAAAGGTATAGAAACAAATGTAAATTCTGGAAACCCTCATGAAATGCCTAGTTTCACTGAACAGATAGATCTTAGTCGTAAAAATGTAGATCCAAACAGTATATCGTCATTACAGCTACAGAAAGATCGACCTTACTATTCAGAAGAAGTAGACTTAAGTAGTCGCTCTAAAAATAATGATAGCCATGTTACAAGTAGTCAACAGGTAAAATCTGATAAATTACCATATTATGACCAAATTGACTTTAGTCGTATAAAAGATATAAGTACTCAATCTCAGAAGCATGAcaaagtacttttttatgaccAAGTTGATTCAAGTCATTCCAAAAATATAACCACAGATAGGCTAAACTTAGAACCCTCTAATTTAGAGGAAACACCGGTGGAAAGCCCAAAGCCGCCTAAAACTGATGATCCAGAAGAAATTGCTTTAAAACCAACAGGTGATAGTATTGAAAACAATCCTCAAAAAGGTGTGGAGTCAGTGCAGATGGAGATAGAAAAAGATGTGatacaaaatatgtcaaatgAGAATGAAAAACCAAAATCCCCAAATCCAGTcaaagaaattgaaaaagatACAAATGTTAATTTAGATCTAACTACAAAACCACAAGAACCTCCAAAAGACAGCTTAGAGAATCGTCCCGTTCCTAATTACTCAAATGAACAAAGAAGACGTAACTTAGCCAATACTGTGCGTATGATAGAAAATATCCTTATTCaaacaacaaagaaaaaagaaacagagACTGTAAATACAGATGTTAACcctaatgatgatgataaaattgATGAGCAGTCCAAAGATGATGATAGCCAGAGCATTCAAAGTGTTGATCACCTTAGTGATGATCATTCAATAAGTAGTACAGATGCAAATGAAAATGATACATCAAATTATGATGATAATTCTGGCAAAATCACCTTAAAAGACATTAAACAAGAGTGTCTGTCTGAACCAGAAACAGATTTTGTAAACatcaaaaaagagaaaatagaTGATGTTGTAGTCAAGGTAGAAATATCACCAGATTTCATTGACATGGATAACTTGAATCCATTCCAGAAAGATAGTTTTGGAGTGCATAGTGAAGAGGTTGGCAATTCAGAGGTTCATGATGCCGAAAATAGCATAGCAATTGCTTTATACACTATTAAAAATGaaactcGACAAAATGACTGTTATTATGAGTGTCCACATTGTAGTTTATACTTTTCACATCCAAAGAGGTTTCTCATCCATACAAAGTGGCATTCCTTTGGTCTAACTAATGAAAAGAGAATGGAGTTTCAAAGGGACAAACTGATGAGGAAAACTATGAGACGGGAGGCAAAAGTCCTTGAAAGGATGCACCAAAATGAAGTTACAGAGGTGGagaaagttgcaggaaaaacATATACTTGTGGTGAATGTGGAAAGGTGTTTTTGAAAAAGGCCAGTCTACAAAACCATAGACAAAGGTATCATCCTACTCGACCACGTGAATGCAAGATATGTGGCAAACTGTTGGTGGGATGGTCACAGCTACGGGATCACCACCTCACTCACTTCTCCGAGGCCGGCTACTACCAATGTGATGACTGCCCCAAGAGGTTCAAATACTCTCACTCTCTGGCTAAACATAGGGATACACATTTGGAAAAAACCCATGGATGTCCAAAATGTACCAAGATGTTCGGTTCAGCGGCACTTCTCAATGTACACTTGAAGACGCACGAGCGAATGTTGCGGGGAGCTACATTCAGGTGTACCTATTGTGGGAAGGGATTTTTCGAGAGTTACCATTTACAGGCCCATGAACGTACTCACCGCAATGAGAGACCGTTTGGATGCGAGTTCTGCAAGACGGCGTTCGGCACAAAGTCTGGACTGGCGAGACATCTAAGAGTGTCGCATAGCTCCGCAAAACCCTGGGAATGTTCAACGTGCCGTCGCTCTTTCGTATCGGAGGGCATCCGAGACCGACACGAGATGAGGAACCACGGGAACCCGGAGGATTTCAAGTTCGTCTGCAAGCAGTGCCCCTGCCGGTACATGAAGATGAAGGACCTCAGGAAGCACGTGTATAAGGTCCATCCGAAAGGGAGACGGAAGAAGAAGTCCGAATCAGACACTGATTAA
Protein Sequence
MLHNTGPFGPNETPINPSGQANMSDMTGQMNISNITNNLTKIGPQSSHPVNSHFNLPDYANYGLNMNAAMNNFHNFHQSGYQQSLMHNASNSWQNSMLPMNLNAQSDPNSVLGYYEKKFEPQNEISEQNFNKSMLNIPQVYTKALHKHLGMDTHSDYYNINNFNNYIDHNLDLCVRSQKTDSPNALDRLSLQQKSRIPPFPEQVDLSRTKTLENQSTSVRNLLENQLSSRNMLHQKLDRPDYPYQYDLSHKPKSQDYHNIDARMSTHQKSPPFYSQHQERLPPKGIETNVNSGNPHEMPSFTEQIDLSRKNVDPNSISSLQLQKDRPYYSEEVDLSSRSKNNDSHVTSSQQVKSDKLPYYDQIDFSRIKDISTQSQKHDKVLFYDQVDSSHSKNITTDRLNLEPSNLEETPVESPKPPKTDDPEEIALKPTGDSIENNPQKGVESVQMEIEKDVIQNMSNENEKPKSPNPVKEIEKDTNVNLDLTTKPQEPPKDSLENRPVPNYSNEQRRRNLANTVRMIENILIQTTKKKETETVNTDVNPNDDDKIDEQSKDDDSQSIQSVDHLSDDHSISSTDANENDTSNYDDNSGKITLKDIKQECLSEPETDFVNIKKEKIDDVVVKVEISPDFIDMDNLNPFQKDSFGVHSEEVGNSEVHDAENSIAIALYTIKNETRQNDCYYECPHCSLYFSHPKRFLIHTKWHSFGLTNEKRMEFQRDKLMRKTMRREAKVLERMHQNEVTEVEKVAGKTYTCGECGKVFLKKASLQNHRQRYHPTRPRECKICGKLLVGWSQLRDHHLTHFSEAGYYQCDDCPKRFKYSHSLAKHRDTHLEKTHGCPKCTKMFGSAALLNVHLKTHERMLRGATFRCTYCGKGFFESYHLQAHERTHRNERPFGCEFCKTAFGTKSGLARHLRVSHSSAKPWECSTCRRSFVSEGIRDRHEMRNHGNPEDFKFVCKQCPCRYMKMKDLRKHVYKVHPKGRRKKKSESDTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00257245;
90% Identity
iTF_00257245;
80% Identity
-