Basic Information

Insect: Calephelis virginiensis
Gene Symbol: -
Assembly: GCA_002245475.1
Location: NJDC01000057.1:90778-105194[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0017 0.15 13.2 0.1 2 23 139 161 138 161 0.95

2 16 0.92 82 4.6 0.1 3 23 398 419 396 419 0.95

3 16 0.0024 0.21 12.7 0.1 1 20 427 446 427 448 0.95

4 16 0.0092 0.82 10.9 0.9 2 23 458 479 457 479 0.94

5 16 0.11 10 7.4 1.3 1 23 527 550 527 550 0.90

6 16 0.045 4 8.7 0.7 2 23 626 648 625 648 0.93

7 16 1.3 1.2e+02 4.1 2.5 1 23 653 676 653 676 0.94

8 16 3.6e-05 0.0032 18.4 1.8 1 23 682 704 682 704 0.97

9 16 3.9e-06 0.00035 21.5 0.9 1 23 711 733 711 733 0.98

10 16 8.4e-05 0.0075 17.3 2.3 1 23 738 760 738 760 0.96

11 16 0.00066 0.059 14.5 1.7 1 23 766 788 766 788 0.98

12 16 2.3e-06 0.00021 22.2 1.5 1 23 794 816 794 816 0.97

13 16 0.00065 0.058 14.5 2.5 2 23 823 844 823 844 0.97

14 16 0.00034 0.031 15.4 0.6 2 23 852 874 851 874 0.97

15 16 2.2e-05 0.002 19.1 0.6 1 23 879 901 879 901 0.98

16 16 0.22 19 6.6 4.0 1 23 907 930 907 930 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0017	0.15	13.2	0.1	2	23	139	161	138	161	0.95
2	16	0.92	82	4.6	0.1	3	23	398	419	396	419	0.95
3	16	0.0024	0.21	12.7	0.1	1	20	427	446	427	448	0.95
4	16	0.0092	0.82	10.9	0.9	2	23	458	479	457	479	0.94
5	16	0.11	10	7.4	1.3	1	23	527	550	527	550	0.90
6	16	0.045	4	8.7	0.7	2	23	626	648	625	648	0.93
7	16	1.3	1.2e+02	4.1	2.5	1	23	653	676	653	676	0.94
8	16	3.6e-05	0.0032	18.4	1.8	1	23	682	704	682	704	0.97
9	16	3.9e-06	0.00035	21.5	0.9	1	23	711	733	711	733	0.98
10	16	8.4e-05	0.0075	17.3	2.3	1	23	738	760	738	760	0.96
11	16	0.00066	0.059	14.5	1.7	1	23	766	788	766	788	0.98
12	16	2.3e-06	0.00021	22.2	1.5	1	23	794	816	794	816	0.97
13	16	0.00065	0.058	14.5	2.5	2	23	823	844	823	844	0.97
14	16	0.00034	0.031	15.4	0.6	2	23	852	874	851	874	0.97
15	16	2.2e-05	0.002	19.1	0.6	1	23	879	901	879	901	0.98
16	16	0.22	19	6.6	4.0	1	23	907	930	907	930	0.97

Sequence Information

Coding Sequence: atgtcctcTGATGATACCGACGATGAACCGCTTTCGGTATTAGCCGCTTCTAAAAGATTAAACCACGAAGAATATGATGAAGAGGCTAGAGGAAGTGATGATGATGAACCACtaacgaaaaagaaaaaagaaccgCTGACAAGAAACTTAAGTTTGACgctaaaaataaacagaaaattgaaacagttaACACAACCCGTTATTGAAAGACCGCTCGATGTTTGGCTGTATCTCAAAGATTTAAACCCCACTGGACCTTACACTTGCTTGTTATGTCCGGATTGGTTTATAAACCGCTCAAAAATGGTGATGCATTAcgttttaaatcataaaaaagactTCTGTGGAATTTGTAGatACTTTGTACCAGATAGGGAAGCATGGATAGCACACGAGAGCTTCCATACACCATGGCCCTGTTCACAGTGTGTGGAGACTTTTCCTACTGAAACATTATTACGTAGTCATCTGAGAAATGTACATAATCTAGTTCACTGTAGACTATGTCATTTCCGTGTCCCTGCAGATGAACAATATGACtctcatttatttcaaaaacacaaTGTCACAAATATGTCttttaaagaagaagaaagtcTTTGGGAATTTGAATCTGAAGATGCTCAAAAGTTTACATGTTTGCTCTGTGCCAAAGTAGATGTAGCTCTTCCCActtttttcaatcactttatggGATTGCaccattttactttaaaatgctTGACAGGTCTTGTTTCTGGTAAGGATCCTCCATTCCTAGTTACTGGTGCTGAGCTCAGTTCTAAGTTTATAGAAGAACAGCTAAAAAACAATAAGATACGCTTTGGCTATGTGGATTTAGAACAAAAGACATTTGAATCTGATAATCAGTGTAGCATGGACATTCAAAATGAATCTATGCCTTACATAAAAGAGGAAGTTCAGGAGGCAAGTGACGAAGAAGCTGATGAAATGGAAAAAACTGAAGAAGTTAACAAAGATACTGAGTCAAGTAATAATGTTGGATATGTCAAAATTGACTATAGAGGGGTGGAGGACTTTGATATTACACTAACCGAGATAATAGTTCTTGAACCAAGTTATGTTGACTATGTAAATAACTATTTACAAGATCTTGAATCTAATAAAGTTCCCGAAAATTCTAATGTGAACTATGTGCAAATGAATCCGGAACTAGCGGAAGGTTTATTTTGTGCACTCTGCTCTGTCAAATATGACACTGTTACAGCATTCATTgcacatattaataaaatgcatAACATGAAAGTTGTGCCTCAATTTACTTGCAGAGTCTGTGCTACAACATTTGACACTCAGGCAGAACTTAAGAGTCATATAACAGAAGAACTGGGTGATTTTGACGACTTGTGGATTTGTCAGTTTTGTGACAAAGAGTTTGATAACAGGGAAACAACCAGGAAACACTTAACGGAGCATTGGAATACATTAGAATATGATAATTGTTTCAGTCCCCATCTtggatttaaatgtaaattttgtcCAAGTCTATTTTGGAATGAACCAGAGAGAGAACATCATCAAGTTAAAAATCATAtgagcaaatatattgatcagTTTTACAAGTGCTATATTTGCTTACAAGCTTATAGTGATAAGGTTTGGTTTGTCCATCATTATGTTGAGAAGCATTCAGAGCAAGGCCAAAAATActcttacttattaaaatgctGTATTTGTTGTATAGTACTTACAAACATAGATGAAATGCGAGGTCACTTTGAACAGTGTCACCCGGAGGCAAAGAAGCTATACTGTTCTTACGATACTTGCAATTACAAGCCTCTAAGTCAACGCAAGTCTTTGAAACTACATACAATTCATGGTCAAGTACAAACGAAAATAGAAAAGCCGGTGAGCTGCAACATGTGCGGTCGTGAGTTTGCCAGTACGCGTGCGTGCACGGCGCATATGTCGCAAGTGCACGGCCCCGGCAAGTTCAAGTGCAAACTATGTAGAGAAGTGCTGAACACACTCGACGAGAGaaaacttcaCTACCTCCTTTGCCATCCTGGACGGCATCCGTTCGAGTGTTCTGAGTGTGGCAAGTCCTTCCAGTACAAGTCTTCTCTGTACATGCACAAACAAGAGCATATGCCCAACAGACAGAGCTACACCTGTACTTATTGTGGAAAAATATTTGCGAAAAAAGATTCATTCCGCGAGCACGTCCAGATCCACGAAGGTCCACGGCACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCCAACATGCTCCGGCACGAGCGCCGCCACACCGGCGAGCGGCCGTACCACTGCCCCGAGTGTCCGCGGACGTTCGCCGACAAGGGCGCTTGCAATGCACACTCCAGaaCACACTCCAAAGCGACATCATTTGCGTGCCTGTACTGTGGACAGACGTTCGTACAGAAGTCTAAACTGACATATCATATACGGAAACACACGGGTGAAAATTTGGAGTCGTGTACGGTATGCTCGAAATTGTTCACTAGCGCATGTTCATTACGCGAACACATGAAGATACATGTCGAGAAAAGGCAAATTGTCCAGTGCCCTCTATGTGataagaaatACCAAGATGAACGTTATATGTTACGCCACTTGAGGACATCACACACGAAAACTCAGTTCACCTGTCCGATATGTCAGAAAGTGGTCACCAGCTCCACGGGACTAAGGCACCACGTGATCACACACAGCTCTCTCAACACCTTCAGGTGCAAATGCTGTCCCAAATCCTATGCAGTGAAGAGGACAATAGTAAAACATCTACGAAAACGGCACAACCTCAACAATACAGAAGTCAATGTCAAAGACTACTACACCCGTCTAGATCCAAGGGAATGCAAACTGGACCTAGACGAAGAAACCATGAACAGTATATTCGGCCCACCGAAAAAGAAACCTCCGGAAATATTACTTGGTGATTTTGTGTCATTCCACAATATGAATATCCAAAGAGCttgggataaaaataaaaaccttgaGAAGGAAAGTCctaagaaaaagagaaaaaggAAAGCTAAACCTAAAAAAGACGTTAATAAAGGCAACAAGGAGAGTGCACAAGACAGTAATAAAGGCAGTGATAAAGAAGGTGCTGTGGATGAAGtggaaaaaattgttttgaagcaaGAAGTCCAAACAGATGAAGATGAATTGGAACCCACAGAttttgttagtgttaaaattgaACCCATGGACTATGACGGTGATGGGGATCAGTGTTAG
Protein Sequence: MSSDDTDDEPLSVLAASKRLNHEEYDEEARGSDDDEPLTKKKKEPLTRNLSLTLKINRKLKQLTQPVIERPLDVWLYLKDLNPTGPYTCLLCPDWFINRSKMVMHYVLNHKKDFCGICRYFVPDREAWIAHESFHTPWPCSQCVETFPTETLLRSHLRNVHNLVHCRLCHFRVPADEQYDSHLFQKHNVTNMSFKEEESLWEFESEDAQKFTCLLCAKVDVALPTFFNHFMGLHHFTLKCLTGLVSGKDPPFLVTGAELSSKFIEEQLKNNKIRFGYVDLEQKTFESDNQCSMDIQNESMPYIKEEVQEASDEEADEMEKTEEVNKDTESSNNVGYVKIDYRGVEDFDITLTEIIVLEPSYVDYVNNYLQDLESNKVPENSNVNYVQMNPELAEGLFCALCSVKYDTVTAFIAHINKMHNMKVVPQFTCRVCATTFDTQAELKSHITEELGDFDDLWICQFCDKEFDNRETTRKHLTEHWNTLEYDNCFSPHLGFKCKFCPSLFWNEPEREHHQVKNHMSKYIDQFYKCYICLQAYSDKVWFVHHYVEKHSEQGQKYSYLLKCCICCIVLTNIDEMRGHFEQCHPEAKKLYCSYDTCNYKPLSQRKSLKLHTIHGQVQTKIEKPVSCNMCGREFASTRACTAHMSQVHGPGKFKCKLCREVLNTLDERKLHYLLCHPGRHPFECSECGKSFQYKSSLYMHKQEHMPNRQSYTCTYCGKIFAKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYHCPECPRTFADKGACNAHSRTHSKATSFACLYCGQTFVQKSKLTYHIRKHTGENLESCTVCSKLFTSACSLREHMKIHVEKRQIVQCPLCDKKYQDERYMLRHLRTSHTKTQFTCPICQKVVTSSTGLRHHVITHSSLNTFRCKCCPKSYAVKRTIVKHLRKRHNLNNTEVNVKDYYTRLDPRECKLDLDEETMNSIFGPPKKKPPEILLGDFVSFHNMNIQRAWDKNKNLEKESPKKKRKRKAKPKKDVNKGNKESAQDSNKGSDKEGAVDEVEKIVLKQEVQTDEDELEPTDFVSVKIEPMDYDGDGDQC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00256216;
90% Identity: iTF_00256216;
80% Identity: -