Cvir014899.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01001516.1:120234-123594[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.01 0.9 10.7 6.2 1 23 151 174 151 174 0.97 2 18 3.7e-05 0.0033 18.4 1.0 1 23 183 206 183 206 0.96 3 18 0.0039 0.35 12.0 1.0 2 23 219 241 218 241 0.97 4 18 0.0015 0.13 13.4 1.1 1 23 250 273 250 273 0.96 5 18 2e-05 0.0018 19.2 1.9 1 23 285 308 285 308 0.96 6 18 0.00024 0.022 15.8 0.9 2 23 335 357 334 357 0.97 7 18 0.0002 0.017 16.1 1.6 2 23 367 389 366 389 0.97 8 18 0.14 12 7.2 2.0 3 19 395 411 393 413 0.94 9 18 0.0084 0.75 11.0 0.5 2 21 419 438 419 441 0.94 10 18 0.023 2.1 9.6 0.5 3 23 451 472 450 472 0.95 11 18 0.0001 0.009 17.0 3.0 1 23 477 500 477 500 0.93 12 18 0.0005 0.044 14.9 3.0 1 23 511 534 511 534 0.96 13 18 3.8e-05 0.0034 18.4 1.0 1 23 557 580 557 580 0.94 14 18 0.066 5.9 8.2 0.2 2 23 587 608 586 608 0.94 15 18 0.012 1.1 10.5 0.5 2 23 614 635 613 635 0.97 16 18 1.5 1.4e+02 3.9 0.7 2 23 642 665 641 665 0.90 17 18 0.014 1.2 10.3 0.2 1 23 701 723 701 723 0.97 18 18 0.22 20 6.5 1.9 1 23 729 752 729 752 0.96
Sequence Information
- Coding Sequence
- ATGGATCTTTCTATAAAAAGGGAAAGAGTAGATATAGAAATTGGGGGAGAAGATGCGAAATCAAGAAATAGAAAAGATCCTACAACCCTTTTACCAGAGGAACCtatgacatatgaaataaaaaagaaaaagaagaaaaaaaagaaagaaattgttgAAGATCCATTTAAAGATATTGAAAAAGTAAAGCTATCAAATGAAACCACACCAGATCCTACTAGTATGTTTACCCCAGAAGTTAGTATTAAAGTGGAAAATATTGAAGTTGAATTAGATTACAATGATtttgcTAATTATAGTGGACTAATGTTAGAAGGGTCACAAACTGTAGACGCTCAAGAACCTGTTGTGAAATTAGAACCTGAAGAGTCGGTTATGTTAACATTTGAAAAGATTATAAATCAAAGTGTCTTGAGTTATGGACAAAATATACCTCAATCTGCACCTACGCATGTATGCAAAGTCTGTCATCTAGtctttcaaacaacaaaaactttaaagaTGCACCAGAAAAGAAAACACAAAGTGTTTCGGAAGTCTTTCAAACATATTTGTGATTATTGTGGAATGTCTTAtgagcaaaaaaatagtttggttgctcatataaaaagaaaacatggcCCGAACTCCACCGCTGATGATGGAGAAGAAAAAACTTGTGATGTATGTGCATTGGTATTTAAAGGCCAAAACAGACTACGGATGCATATGAGGAGAAAACACGGATCTTTTGAGGAATCCTTTCGTCATATTTGTCAGGATTGTGGCTTGACTTATGACAAATATAGAAGTCTTGTAGTTCATATTCAGAGAAAACATTCCAATGTTAAAAAACCTGATTTATTGCAATGGTTTAACTGTCCATTTTGCCCGAAAGTTTTTACTAGAAGAGAGACTTATTCAAGACATGTTCAAAGAAAGCACAGGGTTAGTGATGaagaaaatatggaaactgaagAAGcccaatttgaaaattatacaaatgcaGAAACAGGCGAAATCACATGCACTGAATGTCAATTAGTTTTTTCCTCGGTTAACTTCCTTAAATTGCATATGAGAAGAAGGCATAATGCCCTTAAAGAAGATTTCAGACTTAAATGCAAAATTTGTAAGCTTTCATATGATAAAATTGAAAGTTTAAAAAGGCACATACGTCGGAAACATGACAAAGGTTCTCATTGTGATGTTTGTAACAGACAATTTGATACAAGAGAACAATATTTGAATCATTCTCATGAAAAGTCAATTAATGAATGTAATTTATGTGGTTTGATTTTTGCGTCTCAGGGTGGATTAGGAAAACACTTAAGGTGTACACACAAACTAGATTCGCCGAAAACAGTGTTTTGTGATTTATGTAATGAAGGATTTTATGATAAACGGCAATTAAAACCACATTACATGAGAGTGCATCTAAAAGCTACATATACTTGTCAATATTGTAACAAAGTGTTTAAAGCAAAAGAAAGCTTTCGTAGACATGTTCTATTCAAACATCCAAAAAGTGTTGCTGATAAAACTCATATGCACAAATGTGATAAATGTTCTGAGGCATTTGCTAATGAATTTGATTTATgcaaacatattaatttaaatcataGAGACCCAGATGATGAATTTGGAGCTCTTTGGACAGTTAAGAAAGAGGATGATGTCTCTGACTCGTTCCAATGCACAAAATGTCCTGAAACATATAATTCTTGGGAACAATTACGGACTCATTATGAGCAAAATCATCAAATAATTTCTGAAACACAGTGTCAAATCTGTGGAGAAATGATACCAAGCAATGAATTACAAAAGCACATTAAAAACTTACATACAGACACAACTGTTCAATGCAAGTATTGTGAATTTGTTAGTGATAACCGTGCAAGCATGACACAGCACTTGTTAAGACATCAGGATGCGGCCACATCTAGGTGTGATTACCCTGGTTgcaaatataaaagtttttacgAAGATGCAATGGCAAAACATAAGAGAAAACATGCAGACCAGGGTGTTAAGTTACAATGTTCAGAGTGTGCTTTTCaaacaatgaataaatacatattgAAGTACCATGAGGAAGCTCATGCTACTGGTAAAAAGCGTTACTCTTGTGACCAGTGTGATTATGCTACGATTCTGCCAGCAAATTTAGtacaacataaatataaacattctaCGGAAAAAAGGTTTCGTTGTGAAGTATGTCCGTTTGCAACAAAATATAACACTTCGTTACGTTTTCATGTTAAGAAGAAACACTGTGATCTCCCgtcatttagttaa
- Protein Sequence
- MDLSIKRERVDIEIGGEDAKSRNRKDPTTLLPEEPMTYEIKKKKKKKKKEIVEDPFKDIEKVKLSNETTPDPTSMFTPEVSIKVENIEVELDYNDFANYSGLMLEGSQTVDAQEPVVKLEPEESVMLTFEKIINQSVLSYGQNIPQSAPTHVCKVCHLVFQTTKTLKMHQKRKHKVFRKSFKHICDYCGMSYEQKNSLVAHIKRKHGPNSTADDGEEKTCDVCALVFKGQNRLRMHMRRKHGSFEESFRHICQDCGLTYDKYRSLVVHIQRKHSNVKKPDLLQWFNCPFCPKVFTRRETYSRHVQRKHRVSDEENMETEEAQFENYTNAETGEITCTECQLVFSSVNFLKLHMRRRHNALKEDFRLKCKICKLSYDKIESLKRHIRRKHDKGSHCDVCNRQFDTREQYLNHSHEKSINECNLCGLIFASQGGLGKHLRCTHKLDSPKTVFCDLCNEGFYDKRQLKPHYMRVHLKATYTCQYCNKVFKAKESFRRHVLFKHPKSVADKTHMHKCDKCSEAFANEFDLCKHINLNHRDPDDEFGALWTVKKEDDVSDSFQCTKCPETYNSWEQLRTHYEQNHQIISETQCQICGEMIPSNELQKHIKNLHTDTTVQCKYCEFVSDNRASMTQHLLRHQDAATSRCDYPGCKYKSFYEDAMAKHKRKHADQGVKLQCSECAFQTMNKYILKYHEEAHATGKKRYSCDQCDYATILPANLVQHKYKHSTEKRFRCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00256193; iTF_00144907;
- 90% Identity
- iTF_00256193;
- 80% Identity
- -