Amor034071.1
Basic Information
- Insect
- Apodemia mormo
- Gene Symbol
- -
- Assembly
- GCA_036924255.1
- Location
- JAUPFN010000027.1:3417216-3421940[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.015 2 10.4 6.1 1 23 157 180 157 180 0.97 2 18 7.9e-05 0.011 17.5 0.6 1 23 189 212 189 212 0.96 3 18 0.0025 0.35 12.8 1.0 2 23 225 247 224 247 0.97 4 18 0.00099 0.14 14.1 1.1 1 23 256 279 256 279 0.96 5 18 5.4e-05 0.0075 18.0 1.4 1 23 291 314 291 314 0.96 6 18 4.8e-05 0.0067 18.2 0.8 2 23 341 363 340 363 0.97 7 18 0.00011 0.016 17.0 1.3 2 23 373 395 372 395 0.97 8 18 0.071 9.8 8.2 2.1 3 19 401 417 399 419 0.94 9 18 0.0093 1.3 11.0 1.2 2 21 425 444 425 447 0.94 10 18 0.026 3.6 9.6 0.5 3 23 457 478 456 478 0.95 11 18 0.0016 0.23 13.4 3.1 1 23 483 506 483 506 0.93 12 18 0.0083 1.1 11.2 5.9 1 23 517 540 517 540 0.95 13 18 0.00013 0.018 16.9 2.0 1 23 564 587 564 587 0.94 14 18 0.16 22 7.1 0.2 2 23 594 615 593 615 0.93 15 18 0.0086 1.2 11.1 0.5 2 23 621 642 620 642 0.97 16 18 4 5.6e+02 2.7 0.6 3 23 650 672 649 672 0.87 17 18 0.015 2.1 10.3 0.2 1 23 708 730 708 730 0.97 18 18 0.25 35 6.5 1.9 1 23 736 759 736 759 0.96
Sequence Information
- Coding Sequence
- ATGATGGATCTTTCAATGAAAAATGAAAGagtagatatagatattacaaTAAAGGacgatgaaaatgaaaaaagaacAGATCCTACAACACTTTTACCAGAAGAACCAATGtcatatgaaattaaaaagaaaaagaagaaaaaaaagaaaaaagttgaAGACCCATTTAAAGGCATTGAAGAAAAAGTGAAACTACCCACACCAGCAGTATATGAACCAACAACTGAACCTACAGATGTGTTTAATCCTGAAGTTAGTATTAAGGTGGAAAATATTGAGGTAGAATTAGATTTTAATGATtttgcaaATGATAATGGACTAATGTTAGAAGGACCTCATAGTGAAGATAGTCAAGATCCAACTGTAAAAATTGAGCCTGACGATTCAGTTATGTTAACAATACAGAAGATAATAAACGATGAAGGGGTTCTAGGCTATGGACCAAATGGTCCCCAAGCTGCACCTATCCATGTGTGCAAAGTTTGTCATCTGGTCTTTCAATCAACAAAGACTTTGAAAATGCATCAGAAAAGAAAACACAAATCATTTCGAAAGTCCTTCAAACATATCTGTGATTATTGTGGAATGGCATATGAACAGAAAAACAGTTTGGTAGCTcacataaaaagaaaacatgGCCCTAATTCCACACCTGATGATAGGGAAGAAAAAACTTGTGATATATGTGCATTAGTCTTTAAAGGTCAAAATAGATTACGAATGCACATGAGGAGAAAACATGGTTGTTTTGAAGAATCATTTCAGCATGTTTGTCAGGATTGTGGTTTAACATATGATAAGTATAGAAGTCTTGTTGTCCATATTCAGAGGAAACATTCCAATGTTCAAAAGCCTGATTTGTTACAGTGGTTTAACTGTCCATTTTGTCCAAAAGTGTTTACTAAACGTGAGACTTATGCAAGACATGTTCAAAGAAAACACAGAGTTAGTGATGAAGAAAATATGGAAACTGAAGAAGCAGAatttgaaaattgtaaaaataaacaaacaggGGAAATCACTTGTAAAGAATGTCCCCTCGTGTTTTCATCTTTAAATTTTCTTAAGTTACATATGAGAAGAAAACATAATGCCTTGAAAGATAATTTCAGGTTGAAGTGTAAAATTTGTAACCTTTCTTACGAAAAAATTGAAAGCTTAAAGAGACATATACGTCGAAAACATGATAAAGGTTCCCATTGTGAAgtctgtaataaacaatttgataCTAGAGAACAGTATTTAAATCATTCacatgaaaaattaattaatgaatgTCACCTGTGTGGTTTAATTTTTGCATCCCAGGGTGGTTTAGGAAAGCATTTAAGATGTACACATAAAatagattcaccaaaaacagtATTCTGTGATTTATGCAATGAAGGATTTTATGATAAACGTCAGTTAAAACCACATTATATGAGAGTGCATTTAAATGCAACATATACAtgtcaattttgtaataaaatcttCAAAGCAAAAGAAAGCTTTAGAAGGCATGTACTCTTTAAACATCCTACAAGTGTTGATGATAAAAGTCAAATGCACAAGTGTGATAAATGTTCGGAAGAGTTTACTGATGAGTTTGAATTATGTAAACATATTCATTTAAGTCATAGAGACCCAGAAGATGAATTTAGTTCCCTTTGGACAGTGAAGAAAGAGGAAGATGATACATCTAATTCGTTTCAATGCACAAAATGTCCGGAAACATACAACACATGGGAACTGCTAAGAAATCACTACGAGCATAATCATCAAATAATTTCAGAGACACAATGTCAAATCTGTGGAGAAATGATTGCAAGTAATGAACTACAAAAGCATATTAAGAATTTACACACAGACACAAATGTTCAATGTAAATATTGTGAATACATAACTGATAATCGTGCTAGTATGACCCAACATTTATTAAGACATCAAGATGCAACAACTAATAGATGTGATTATCCAGGTTGTAGGTATAAAAGTTTCTACGAAGATGCAATGGCAAAGCATAAGAGAAAACATGCCGATCAAGGTGTCAAGTTACAATGTTCAGAGTGTTCATTTCAAACAATGAAcaagtacatattaaaatatcatgaaGAAGCTCATGCTACCGGCAAGAAACGTTATTCCTGTGATCAATGTGATTATGCTACAATTTTACCAGCTAATTTAGTACAACATAAGTACAAACACTCAACGGAAAAAAGATTTCGATGTGAAGTGTGCCCTTTTGCAACAAAATACAATACTTCATTACGTTTCCATGTTAAAAAGAAACACTGTGATCTCCCGTCATTAAGTTAA
- Protein Sequence
- MMDLSMKNERVDIDITIKDDENEKRTDPTTLLPEEPMSYEIKKKKKKKKKKVEDPFKGIEEKVKLPTPAVYEPTTEPTDVFNPEVSIKVENIEVELDFNDFANDNGLMLEGPHSEDSQDPTVKIEPDDSVMLTIQKIINDEGVLGYGPNGPQAAPIHVCKVCHLVFQSTKTLKMHQKRKHKSFRKSFKHICDYCGMAYEQKNSLVAHIKRKHGPNSTPDDREEKTCDICALVFKGQNRLRMHMRRKHGCFEESFQHVCQDCGLTYDKYRSLVVHIQRKHSNVQKPDLLQWFNCPFCPKVFTKRETYARHVQRKHRVSDEENMETEEAEFENCKNKQTGEITCKECPLVFSSLNFLKLHMRRKHNALKDNFRLKCKICNLSYEKIESLKRHIRRKHDKGSHCEVCNKQFDTREQYLNHSHEKLINECHLCGLIFASQGGLGKHLRCTHKIDSPKTVFCDLCNEGFYDKRQLKPHYMRVHLNATYTCQFCNKIFKAKESFRRHVLFKHPTSVDDKSQMHKCDKCSEEFTDEFELCKHIHLSHRDPEDEFSSLWTVKKEEDDTSNSFQCTKCPETYNTWELLRNHYEHNHQIISETQCQICGEMIASNELQKHIKNLHTDTNVQCKYCEYITDNRASMTQHLLRHQDATTNRCDYPGCRYKSFYEDAMAKHKRKHADQGVKLQCSECSFQTMNKYILKYHEEAHATGKKRYSCDQCDYATILPANLVQHKYKHSTEKRFRCEVCPFATKYNTSLRFHVKKKHCDLPSLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00257163;
- 90% Identity
- -
- 80% Identity
- -