Cvir002426.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calephelis virginiensis
Gene Symbol
Hr39
Assembly
GCA_002245475.1
Location
NJDC01010237.1:9137-36949[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.11 1.5e+03 -1.1 2.9 74 179 71 179 36 192 0.56
2 4 2 2.8e+04 -5.7 10.9 67 200 164 302 97 324 0.51
3 4 1.9e-06 0.027 14.5 0.2 1 17 391 407 391 415 0.95
4 4 9.4e-65 1.3e-60 206.6 0.0 202 408 464 671 408 671 0.89

Sequence Information

Coding Sequence
ATGGTGAATACTGTCATGTCGGGAGAGGGTGACCCCGTTAAGGTAGAAGGGGTGCATGTTTCCGTGACTACCATCGGAATGTCGGGCCCGGAGACGAGCAATGGTCCTTTTTCGTACAGTTCCAGTGGGGTTCGCATAAGCGTGTCATCAGAGCCGCACGATGAAGATTCAACTGATGCCGAAATATCCAAGATAGATTTCGCACAGCACCAATACGAAGTAAACGAGAACAGTAGCTCCCTAGATTTGCAGTCATCACGAGATTCTATAGACACACTCAGAAATGTCACCATCAAGACGGAACCACTGAAAGCAGAAACTTTCCAGAGTTTGGATGACCAAAGGGTGCTAGATCTGAAGTACACCGCGCCGCTGCAGTCGCATCAACGTAGTCTTAGCAGCAATAGGATATCAGTGTTGACGGATAATTCAAACCTTTCGTTGCCACGAAGACCGTTATCCCCCTCGAGTACCAAGTCGCATAACGACCAGTATGATCACACCGCGCCAATGCTGGCGCTCAGTCCTACTGAAGTTCAGAACCTTACCATCAAGAAGGAGACGCAATTATCAGAGTTAAAATGTGAGCCAGTGACGATGGAAAAGATGTTAGGCGTGGGATCTCCACTGCTGGGACGGCTACCTCGAGTCCAATCCAGTGCTAGTACCGACTCAGCTGTGCACTCCATGTATACACATAGTGTATACAGCAGTCCCTCGGCGTCCCCGCGGCCGGCGCGTCTGTACACGCCGTCGCTGTCCCGCAACAACAGCGACGCCTCGCACTCCTCCTGCTACTCCTACAGCTCCGAGTTCTCGCCCACGCACTCGCCCGTGCAGAGTCGACATCCTCACGTGGTGTACCGAGAGGCGGGCGGCGCGGCGCTGGAGGACGAGGAGACGAGCGAGGATCGGCTGCACCACCACCAGGGCATCAGCCGGCAGCAGCTGATCAACAGTCCATGTCCTATATGCGGAGACAAAATCAGTGGGTTCCACTACGGTATATTCTCTTGCGAATCTTGCAAGGGTTTCTTCAAACGGACTGTGCAGAACCGGAAGAACTACATGTGCTTACGGGGAGGAACTTGTCCCGTCACCGTGGCGACGCGGAAAAAGTGTCCCGCTTGCCGGTTCGACAAGTGCTTGGGCTGTGGAATGAAGCTTGAAGCGATCCGCGAGGACCGCACGCGGGGCGGCCGGTCGACGTACCAGTGCTCTCGAGGAGAAACAAGTAACAGCCGCTTAACGCCTGATATTCCTCCATTATTACAGgAAATAATGGACGTGGAACACCTGTGGCAGTACAACGAGTCAGAGCTAAACCGGCTCGGCAAGTCGGGGGGAAGTCCCTCCGCCAACCCGCTGCTGGCCGCCTCCGGCATCACGGCGCAGAACTCCAGCGCCGACTTCCTCGCAGACCTCTGCAACATCGCCGACCACCGCCTCTACAAGATTGTCAAGTGGTGCAAGAGTCTGCCCTTGTTCAAGAATATATCGATCGACGACCAGATCTGCCTGCTGATCAACAGCTGGTGCGAGCTGCTGGTGCTGTCGTGCTGCTTCCGCGGGGTCGCCACCCCCGGGGAGGTGCGGGTGGGCGCCGGCCGCGGGATCACGCTGCACCAGTCCGCCAAatacggCCTCACCCCGTGCATAGAAAGAATGCTGAGCTTCACGGACCACTTGAGGAGGTTACGGGTGGACCGATACGAATATGTGGCGTTAAAAGTCATCGTGTTGCTTACATCAGATGCGCCTGAACTGCGTGAGGCGGAGAAAGTCCGTGCGTCACAGGAGAAAGCGCTGGCAGCGCTGCAAGCGTACACGGCGACCCACTCGCCCGACGCACCCGCCAAGTTCGGGGAGCTGCTGCTGCGGATACCCGAGCTGCAGCGGACTTGCCAGttttttatgCAAGTCGGAAAGGAAATGTTAAACCCAGCCAATAAAAGTAAAGATGGCGACGGACCAAGCTTCAACTTACTCATGGAGTTGTTGAGAGGTGATCACTGA
Protein Sequence
MVNTVMSGEGDPVKVEGVHVSVTTIGMSGPETSNGPFSYSSSGVRISVSSEPHDEDSTDAEISKIDFAQHQYEVNENSSSLDLQSSRDSIDTLRNVTIKTEPLKAETFQSLDDQRVLDLKYTAPLQSHQRSLSSNRISVLTDNSNLSLPRRPLSPSSTKSHNDQYDHTAPMLALSPTEVQNLTIKKETQLSELKCEPVTMEKMLGVGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRPARLYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQSRHPHVVYREAGGAALEDEETSEDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGTCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSRGETSNSRLTPDIPPLLQEIMDVEHLWQYNESELNRLGKSGGSPSANPLLAASGITAQNSSADFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCFRGVATPGEVRVGAGRGITLHQSAKYGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYTATHSPDAPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKSKDGDGPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00985246;
90% Identity
iTF_00257038;
80% Identity
iTF_00257038;