Cvir003604.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- MBD-R2
- Assembly
- GCA_002245475.1
- Location
- NJDC01001001.1:61876-87548[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.8e-16 6.1e-12 45.6 0.0 5 66 773 833 769 849 0.91 2 2 2.1 1.5e+04 -3.7 0.0 44 67 1141 1162 1139 1163 0.83
Sequence Information
- Coding Sequence
- ATGGCTGTAAAAACTTGTTGTATAGAAACCTGTCAGTCCTCTGCTACTCGGCCAGAGGATGTTGGGGTTACTTTTCACAAGTTCCCAAAGAACTTGCTTCGAGAACGCTGGCGATCTGTTACTCAGTTTAAAAGGAATATTGATTCCCAAACTTATGTTTGTTCAAGGCATTTCTGTAAAAATGACTTTAGATTATATGATGgctcaaaatatgttttgaaaaCAGaTGCAACACCATCAATATTTTCTTGGACAAAagataaaacaacaaataaaaaaatggattatGATATATTTAATGATAATCCTGAGGAACAAATTAATACATCCTCAAGTAGCAAGGAGTCTGACGTTCAAAATGTTGAAGCCATACAAAAGTTCATTGAAGATCAAGAGAAAGAATTAAACAAATCTTCAGAAATTTATGAAAAACCTGAAAGTAATgatgtaaaacaaaacaatgaatCTCAAAATGAAATGATAGATGTTAGTCACCACCAAGAACCTGTGTCTATTAGCACAGTGGCTTCTATGAGTACAAGTGTGATGAACATGATTTTAAGTGAGCCTGAAACTAAAATGGCACCCATAGACGACAAACCTTTACCTAAACACATTGGTAGCGCAGGAGAAAAAGGTAACAGTGTTGCCCTAACGGTTGGCTCAGAAGTGGAAGCGAAAGATTATGCAGGAGTCTGGCATGCAGCAAAGATCGTAGAAGTGGACTATGATGAAATGGAGGTATTGGTCCACTATGAAGATGTTTTATGCAGATCTGATGAATGGATTACCGTGAATAGCACAAGACTTAGACCAATTAGTGCTAAACCTTTAAATGACACAGTAGATAGTCCTTCAACATCGACCATAGCTGCGAATGCAACTGTGCCTTGTGTAAAGACAGCTAAAGAAGAAATGGGTGAAGACAAGTCGAAAGTAACGTACTCTATCGGAGAACGGTGCTTAGCGCGGTGGAGAGACAATCGGAGATTTGAAGCTACTATAACCAAGGAACTGGAAAATgGTGAATATGAAGTAGTATTTGACGATGGTTTTCAATGGAAATGTACTACCTCAAGgctttataaatacaaaaaatcctCTAAAGTTGGCGATCTTAGCGTTGATACAACCATGTCCCCTTCAACATCTTCGCCGTCCCCTGTTTTGCCTGGAGTTGGTCCAAGCACAGGGGTGTCTGGTGCTCTAAATCCTCCTTTCCATACTCATTTATTTGATCCCACTCGTGACTATTTGAGCTCAAAGACAGAACGTCGcgaaatgaaaagaaaactaaacattaaagaaatattCAATATCGGTCAGAAGAAGAAAAGAATATCGACTACACCGCCAGTGAAAAGAGCACCAGTTGTAAGAGAGAAACGTAAACGTAAGCGGGGGAAAAAAAGGATTAAACAGGAACCAGAGGAAGACGCTACTATTAAAGAAGAAACTAAAGAGCTtcctgATGCTGTGGCTTCCATAATAGGGACTGTTGCTAAGTCTGAGGATATGACAAAAGACTTGATTGAACCTCACGAGTTAGGTATAAAGAAAGAACCAGAAGACCTAGCAAGTCCAGATATAAGTGAACCGTTACATGACAGTGGTGAAATCTTACTTACGAAAAAAGAACCAATGGATATCACATCCGATCTTAGCTTATCCAACAATTCAGAGGAACAAAATGCTAGCGCCACGATTGAACCTGCCAGCGAGGAAGAGAGTAAATTagagaaatttgaaaaaccagaTGAAACTAAACATGAAAAAGTAATGGACAAGTTTAAAGAAGTTATAAATAAGTTAGAGGTTGGattgaatgaaattgaaaaagttAGCTCACCTAAAGTAGAAATTAAATGCCAGACATTGGAACCAATAGTTGTGGAACCTCCTCTATTGGTTcctaaagaagaagaaaagccATTGGTTTCTCCCGAAACTGTCCTGCTAGCTGCCCccgtaaaagaaataaaagaggacactgaaaaacaaaagaaaaaattatctaagattaaaaagacaaaaaaattgcgtttgttacaagaaaagaaagtaaaaagaCAAGTGGAGAAAGTGAAGAGTGAATTAGAGGAGATGAAGCGCCAAGTTGAAGAGATGAAGAAacagatgatgatgaagactgAGGAGCTATCGAAACAAACACCTCAGGAAATGCCTGAGAATTTTCTATTGCCCGGAGAGTGGTGCTGTAAGTGGATTAATGGCCAACCCGTGGGAACTGTATGTGAATTGGAAACAGAAGTCAAAGATGCAAATAATAAGCCAGCTCTTCCACGACGTAGTGTACAGgTGGAAGACAAAAGGCTGCCTCCCGGCTGGACGAAACACATGGTTCGCAGGAGTTTTGGTCAGTCGGCAGGGAAATGGGATGTTGTTTTAATCGGgCCAGACAACCATCGTTTCCATACAAAAACCGATATGAGAAATTACCTGGATCTCCATCCAGAACAAAATCTAAGGCCCTACGAGCATGCCTTGTTAGATTTTGGGGTTCATTTGAAGCTTTCGAGACGTATGGGCTGGTTTAAAACTGTCAGCGGAGAAGTAGCTCAGCCTACTGGCATAATAGATAGCTTATCACCATTAGTCAAGCGAAAAAGTTTAAGCCTTAAAAGGAAAGGACCAAGAAAGGAAAAGCCAAAGCTGAAGAAATTTTCGAAGCGTAACtttttaaaggtGCCGGAAGATGACCCCAGTGATGTATTTGATACATCTGAAAACGCCAACGATATGTCGTATGATCAGCCAACGTTGGAAGATGGCTATGTGTATGTTGGTTCATTGAAAGTTCAAGTAATTGAAAATCTTCTTCGATGTCCAGCTGAAGGTTGTTTTAAGAACTTtagaaataatacattattaaaaatgcacataaAACATTATCACAGAGAACTGAGAAAATTATTGGGAGTAACTCCTAAAGTGTTGGACCTAGCGTACGCTAGATCAAAAACAAAACCTACTGATAAGAAACCAAAAAAGGTACGACGTGATCCGATGTCTAAGgttataaaagtgaaaatacCCAGAATACACAAACGTGTTGAAGAACCGATGCCAGTTGCACCTGATGTACCTATAGAACCGACTGTACCTCCAGTACCAAAGATAGGAAGGATCATACCGAGATCTCAAGATTCCCCGAAGCTTCGACAAGCTTTGGCCAATAGCAATAAACCGGTAAAACGTCCTAAAGTACTTCTACCAGTCAGAAGACCAGATCCACCGGACATAGCCTCAGAAATGGACGAACCGCCTTTAATGGACTTCGAGGATGTAGATTTAGATAACTCAGAAATCCCAATGCCATTGGATTTCGAATCTGCAATATCTACCCATACTGTAACAAAACCACCATTAGATGAGCCAAAAAAACCTGAGAGTAAAAAGAAGTCAATGAGTGAGACAGAAGAGTGGTTGGCTGTGAACTCGGATTTCGAGACTAGATCCAGTTTTCCAGGATCGGGGACACCGGATTCGAAGTCGCGACATGACAATGATAAACCCTTGAGTAACAATCCTGGCGTTTCTTCAGAGTCTAATGAGGATAAGGAAGTCCCCGAGAAGTACACGTGCAGCATCTGCCTGAACCCGCGGCGCGGGCGGCGCTCGATGCGGTTCCTGCACGACCAGGACCGGCTCTACGAGGGGCTGCTGCCGGGCGCGCGCCCCTCCGACTGCCTGCGGCGCTCGCACGAGCTCTCCGGCAACCTGCTGAGGATACAGGACGCGCTGCACGCTCTAAGGGTCAAGTACAACGTCGCCTCaaaTCGAAATCACCCAAAACTGTATCTTTGGGCAAAAGATTGGGAAAGCGCAGAAGTAAATATGACTCAAGAGAAACTTAACTCAGACTACTCCGATTTGAATATAATCATAAACAACATTGGCAAAGAAAATTTGCCGGTGAGAGCCGAAGATTTACGGGATTTGAATTTAGATGCGAGGACGACTCCATGCGATGATGACAATAGGGACCCGCAGTTGATGAGCTTGGCCAACGCCCTCTCGAGTCCAGGTGGGACTTCCTTAGACTTGCCTATCTCTACATCAGAGTTGGAACGGCTGGCGAAATCTGTTCAAGAGCAAGAGAGCGGCGTGTCTGGCGTGTCTGGTGTGTCTGGGGTGTCCGGGGTGTCGGGCCCGCAGCCGGAGCCGGCCATCGAGAGCGGCGCGTGTCGCGAGCGGCTGCTGCGACACGTGCGCCGGTGTCAGGCGCTCATCGACGCCAGGCTCGACTCCATCGAGGCCCAGGTTGCAGAATTGGAATCTCAAGACCCATCGTTCGAAGATGACGAAACAGCAGACTATTTCCCTCGAACGAAACAAACCATACAAATGTTGATGCGCGATCTGGACACCATGGAAGAGCTTGGAACGATTACATAG
- Protein Sequence
- MAVKTCCIETCQSSATRPEDVGVTFHKFPKNLLRERWRSVTQFKRNIDSQTYVCSRHFCKNDFRLYDGSKYVLKTDATPSIFSWTKDKTTNKKMDYDIFNDNPEEQINTSSSSKESDVQNVEAIQKFIEDQEKELNKSSEIYEKPESNDVKQNNESQNEMIDVSHHQEPVSISTVASMSTSVMNMILSEPETKMAPIDDKPLPKHIGSAGEKGNSVALTVGSEVEAKDYAGVWHAAKIVEVDYDEMEVLVHYEDVLCRSDEWITVNSTRLRPISAKPLNDTVDSPSTSTIAANATVPCVKTAKEEMGEDKSKVTYSIGERCLARWRDNRRFEATITKELENGEYEVVFDDGFQWKCTTSRLYKYKKSSKVGDLSVDTTMSPSTSSPSPVLPGVGPSTGVSGALNPPFHTHLFDPTRDYLSSKTERREMKRKLNIKEIFNIGQKKKRISTTPPVKRAPVVREKRKRKRGKKRIKQEPEEDATIKEETKELPDAVASIIGTVAKSEDMTKDLIEPHELGIKKEPEDLASPDISEPLHDSGEILLTKKEPMDITSDLSLSNNSEEQNASATIEPASEEESKLEKFEKPDETKHEKVMDKFKEVINKLEVGLNEIEKVSSPKVEIKCQTLEPIVVEPPLLVPKEEEKPLVSPETVLLAAPVKEIKEDTEKQKKKLSKIKKTKKLRLLQEKKVKRQVEKVKSELEEMKRQVEEMKKQMMMKTEELSKQTPQEMPENFLLPGEWCCKWINGQPVGTVCELETEVKDANNKPALPRRSVQVEDKRLPPGWTKHMVRRSFGQSAGKWDVVLIGPDNHRFHTKTDMRNYLDLHPEQNLRPYEHALLDFGVHLKLSRRMGWFKTVSGEVAQPTGIIDSLSPLVKRKSLSLKRKGPRKEKPKLKKFSKRNFLKVPEDDPSDVFDTSENANDMSYDQPTLEDGYVYVGSLKVQVIENLLRCPAEGCFKNFRNNTLLKMHIKHYHRELRKLLGVTPKVLDLAYARSKTKPTDKKPKKVRRDPMSKVIKVKIPRIHKRVEEPMPVAPDVPIEPTVPPVPKIGRIIPRSQDSPKLRQALANSNKPVKRPKVLLPVRRPDPPDIASEMDEPPLMDFEDVDLDNSEIPMPLDFESAISTHTVTKPPLDEPKKPESKKKSMSETEEWLAVNSDFETRSSFPGSGTPDSKSRHDNDKPLSNNPGVSSESNEDKEVPEKYTCSICLNPRRGRRSMRFLHDQDRLYEGLLPGARPSDCLRRSHELSGNLLRIQDALHALRVKYNVASNRNHPKLYLWAKDWESAEVNMTQEKLNSDYSDLNIIINNIGKENLPVRAEDLRDLNLDARTTPCDDDNRDPQLMSLANALSSPGGTSLDLPISTSELERLAKSVQEQESGVSGVSGVSGVSGVSGPQPEPAIESGACRERLLRHVRRCQALIDARLDSIEAQVAELESQDPSFEDDETADYFPRTKQTIQMLMRDLDTMEELGTIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00256993; iTF_00255983; iTF_00255927;
- 90% Identity
- iTF_00255983;
- 80% Identity
- iTF_00256993;