Cvir027539.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- retn
- Assembly
- GCA_002245475.1
- Location
- NJDC01006905.1:84339-102714[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-18 7.6e-15 55.7 0.0 17 89 31 101 26 101 0.95
Sequence Information
- Coding Sequence
- ATGCAAATAGAGTTTGTGGCCTGCGCACGCGCAACGAATCGCGCGTTTTCCGCCGACGCCGGCGAAGGCGTTTTGTGGAAATCGTTATTGGGTACTCCAATCACCCGGTTGCCTATAATGGCTAAATCTGTACTGGACCTTTACGAACTTTATAATTTGGTGGTAGCCCGCCAGGGACTGGTCGAGGTCATCAACAAGAAGCTATGGCAGGAAGTCATCAGGGGACTGAAGCTGCCATCATCTATTACTTCAGCTGCATTCACTCTCAGGACACAgTACATGAGATATTTGTATGACTTTGAGTGCGAGAAGAAGAATTTCTCCACCAGAGCAGAGCTGGAACTTGCCATCGATGGGAACAAACGCGAAGGTCGACGGTCCTCGGGCCAATATGACCCACATACTGCTACGGTAAGTATATACAACTATATACTtgaacattttctttatgtgtATCCACATACTACCTACTACACAGCATTGGCTCTAGCTAGTCAAGTGGCAGCTGGATCCAGCAAGCCGCTACCGTCTCCATACTTACACCCTGAGCTATTTGGCATGTGGGAGCACATGAAGTTGGAGCCAATGAAAAATGCCCTGGCTGAGGGCACCGTTGCCGCTGATCAATATCACAAACTCTTAGCCAATGTGCAGTATATGTATTCCAAGTTCTACAGCTCCAATCAACCACCAGCAGAACCACAACGcGAAGCACTGAACCTGAGTGAGATTCCAAGCTTCAGTAGTGAGAGATCAGAAGAGGGATCATCGGTTGCTAAACGTCCCCGTGTAGCCATGACCTCCCCAACTCCTGGCCCGTCTCACCATGCACCCGCTTCTATATCACACACTTCTTTGTCGTATACACCGTCTCTATCCCCACAAACTCCCCCATCCCGCGCCACTGCCCCACGAGTGCCGTCTCCACGTCCAATCCCATCGCATCAGAGTAGCTACGGGTTGAATGGTCTGAATGGCCTACACAGCATAAATGGAAGAAATGGAATTAATGGTCGAAGTGCCACGGAAAACAATAACAACACACATTCGCTCAATATCGGAGGCTTCTCCATTAACGTCCAAAGAGAAGTCGACTTCGATTCAGCCAGACCTTTGCTGCGGATAAGGATCGAACTCCTCAATGAAGTCTTCACAGGTGTTCTATATTCAAAGACTGAAACCGAGGACGATCACAATGAGCCCgacaattaa
- Protein Sequence
- MQIEFVACARATNRAFSADAGEGVLWKSLLGTPITRLPIMAKSVLDLYELYNLVVARQGLVEVINKKLWQEVIRGLKLPSSITSAAFTLRTQYMRYLYDFECEKKNFSTRAELELAIDGNKREGRRSSGQYDPHTATVSIYNYILEHFLYVYPHTTYYTALALASQVAAGSSKPLPSPYLHPELFGMWEHMKLEPMKNALAEGTVAADQYHKLLANVQYMYSKFYSSNQPPAEPQREALNLSEIPSFSSERSEEGSSVAKRPRVAMTSPTPGPSHHAPASISHTSLSYTPSLSPQTPPSRATAPRVPSPRPIPSHQSSYGLNGLNGLHSINGRNGINGRSATENNNNTHSLNIGGFSINVQREVDFDSARPLLRIRIELLNEVFTGVLYSKTETEDDHNEPDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00255598;
- 90% Identity
- iTF_00255598;
- 80% Identity
- -