Basic Information

Insect: Calephelis nemesis
Gene Symbol: -
Assembly: GCA_002245505.1
Location: NJDD01000051.1:454663-459489[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.5e-06 0.00029 21.7 1.7 1 23 256 278 256 278 0.98

2 9 3.4e-08 2.8e-06 28.1 1.6 3 23 286 306 284 306 0.98

3 9 0.00011 0.0096 16.9 0.3 1 23 312 334 312 334 0.98

4 9 1.2e-05 0.001 20.0 1.7 1 23 340 362 340 362 0.99

5 9 2.5e-05 0.0021 19.0 1.7 2 23 545 566 544 566 0.96

6 9 3.3e-09 2.7e-07 31.2 1.6 1 23 572 594 572 594 0.98

7 9 0.0028 0.23 12.6 0.6 3 23 602 622 600 622 0.97

8 9 7.1e-05 0.0059 17.6 1.5 1 23 628 650 628 650 0.99

9 9 0.022 1.8 9.8 0.8 1 23 656 680 656 680 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.5e-06	0.00029	21.7	1.7	1	23	256	278	256	278	0.98
2	9	3.4e-08	2.8e-06	28.1	1.6	3	23	286	306	284	306	0.98
3	9	0.00011	0.0096	16.9	0.3	1	23	312	334	312	334	0.98
4	9	1.2e-05	0.001	20.0	1.7	1	23	340	362	340	362	0.99
5	9	2.5e-05	0.0021	19.0	1.7	2	23	545	566	544	566	0.96
6	9	3.3e-09	2.7e-07	31.2	1.6	1	23	572	594	572	594	0.98
7	9	0.0028	0.23	12.6	0.6	3	23	602	622	600	622	0.97
8	9	7.1e-05	0.0059	17.6	1.5	1	23	628	650	628	650	0.99
9	9	0.022	1.8	9.8	0.8	1	23	656	680	656	680	0.95

Sequence Information

Coding Sequence: ATGGCGCGGTTGCATCAAAACGATAATGGCCGCGTACATCCGCCATTTGCATTTAGCTTTGGGCGGAAAAAGAAAATGGATGTATTTTCCATATGGTCATTATTACGAGAAAGCAGGATATTAGAATTATCCATGTTTTCTATTCAGTATGTGAaagATACGACAGCGCCGTATGTGCTCTACAAAGATGGCGTCGAACGCGCTCCACCCGGGACGCAGTGGGGAGGCACAGTGCTCGATGGCGGTTACCAAATGCAGCACCAAAGCCCAGGCGGGCCTTCGCCACAACCCGAACCGCAGCTCGCCTCACCCGCGCCGTCCCCGTACCCCCCGGCTCCACCGCCCCCAGACCCTTCCGCCGAAGATGCGGCGCAACAACTAGCTCAGCAACAAGCCCAACAACAAGCGCAACAGCAAGCGCAACAACAGACTTCCCCCGAGCACATGCAAGTCGAACAACAACTCCAAAGCCAACAGCAGCAACCGTCATCACAAGATCATCTCGATCGAACGCCGTGTTTTGTCCCTCAACCAGATTTACAACAACAGTATGCAACGCCCTATTTCAAAGATACAAGGCCGACCAGCCACATGCTCGGGACCGGTGGTTTCCCACTTCACTACCTCAAACAAAATGGAGGAGTTCTATCATTAGAGAGCCCTCTCGATCAATACGCAACTCCTGACTTGCGTCATTTACCCGACATAGTTCAAGCTGAGCCACCTAAATCTCGAAAACACAACCCAAATTCAGAGCTTCGGCTCTTCAAGTGCCTGACATGTGGCAAAGACTTTAAGCAGAAGTCAACCCTTCTCCAGCACGAGCGGATACACACAGATTCGAGGCCGTACGGGTGTCCAGAGTGCGGCAAGCGGTTTCGCCAGCAGTCCCACCTGACGCAGCACCTTCGCATCCACGCCAACGAGAAACCGTACGCGTGCGTGTACTGCCCGCGCTCGTTCCGGCAGCGCGCCATCCTCAACCAGCACCTGCGCATCCATTCCGGTGAGAAGCCCTATACGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATATATGCCCCGCCCCGCTCCCCGCGAGCGCCGGCACTGACCCGACTCGCTCGCGTCAATGCCGACGCCGCATACGATCCCCGCCGCCCTCCAACCGTTCGATTCGGTCTCGCATCCATTGGCCTTCCTATCAGTCAAATTCTCGGTCCCCTCGTCGCCCGCTTAGCGGAGGGCGCTCGCGAGACGCGGAACCGATCGCCGGACGCTCCTGTAACCGTCCTCAACGTTTCCCCGCATCTAATCTTCAAGAACGGGACTACGCCGACGTTATGGCCACAGGATGTGCCGTTCCCGCCGGACGAGAATAAAGAAGAAATACAGTCGACCTTCGGAGACGCGGACGGGCAGAATGGGGAGCAGCGCGGGTCATGTTTTTCGCCAGGTGATACAGCGCAATATCCAGCTTACTTCAAAGATACTAAAGGTCTCAACCACGCTGTGTTTGGATCCGGCCTCTCTCTACAATACCTTAAAGGCGGTAAACTTCCAGACGTGTTAGGGGGTCGTGCAATGCCTTTATACGTCCGATGTCCTATTTGTCAAAAGGAGTTTAAACAGAAATCCACACTACTGCAACATGGTTGCATACATATAGAATCAAGGCCATATCCATGTCCAGAATGTGGCAAGCGCTTCAGGCAGCAGTCGCATCTGACGCAACATTTGCGCATTCACACAAACGAGAAGCCCTATGGTTGTGTTTATTGCCCTAGATTCTTTCGGCAAAGGACCATTTTAAATCAACATCTCCGGATTCACACTGGAGAGAAGCCGTACAAATGCACACAATGTGGAAAAGACTTCAGGCAAAAGGCGATTCTCGACCAACATACACGAACACATCAAGGTGACAGACCCTTCTGCTGCCCGATGCCAAACTGCCGCCGACGATTCGCAACAGAGCCTGAAGTGAAGAAACATATCGACAACCACATGAATCCGCACGCAGCAAAGGCGCGGCGGGCAGATGCTAAGACTCCTCGTCCCCTGCCTCCGGCGGCCGCTGTGGTGAAGCCAGAGTTGTACTTCCCGCAGTGCTACGCTCCACCGTTTCAGCAGTTTCCGACTTCGACTGCCGCAGACTTCAAGCCCGCCGTGGGCCCGGGAGCTGTGACGTGTCTCCCCGCGCAGTGA
Protein Sequence: MARLHQNDNGRVHPPFAFSFGRKKKMDVFSIWSLLRESRILELSMFSIQYVKDTTAPYVLYKDGVERAPPGTQWGGTVLDGGYQMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDPSAEDAAQQLAQQQAQQQAQQQAQQQTSPEHMQVEQQLQSQQQQPSSQDHLDRTPCFVPQPDLQQQYATPYFKDTRPTSHMLGTGGFPLHYLKQNGGVLSLESPLDQYATPDLRHLPDIVQAEPPKSRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIYAPPRSPRAPALTRLARVNADAAYDPRRPPTVRFGLASIGLPISQILGPLVARLAEGARETRNRSPDAPVTVLNVSPHLIFKNGTTPTLWPQDVPFPPDENKEEIQSTFGDADGQNGEQRGSCFSPGDTAQYPAYFKDTKGLNHAVFGSGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADAKTPRPLPPAAAVVKPELYFPQCYAPPFQQFPTSTAADFKPAVGPGAVTCLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01078408;
90% Identity: iTF_00673685;
80% Identity: -