Cnem017331.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_002245505.1
- Location
- NJDD01002016.1:110308-133784[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-58 3.6e-54 184.7 23.1 1 168 116 275 116 279 0.94 2 3 1.8e-13 5.1e-09 36.5 4.2 211 297 302 380 299 383 0.75 3 3 0.23 6.4e+03 -3.3 5.8 134 166 416 448 392 457 0.54
Sequence Information
- Coding Sequence
- ATGGGTAATCGGTCAGAACAGGCCACGCCCGAGAACAGTGATGAGGAAAGTGGTGACGCATTCACAGACGGAGATTTTGGTGATTCGGACGATGAAACCATCATCGAACGTGGTCCAGAGTCCAAGTCTCTGCCGATAAATGAAACGATTAACACAGAAATACTTGAAGAGACAAGACTAAATGGTATAGAGAAGATGAACGGGCATGATGAAGTGGAAAATGTGAATGTTGAGGGAAAGACTGAGATGAATGGCTTTTCCGATGATAGTCTATTGGATTTGCGGAGGGATTCGCACAGTGACGCCGGCTCTATAGTTGGAATTCTCGGGGACCAGCAGAACCACGCGGAACAGCGGCTCGCTGCTCGGCGAGCGGCTCGGGCGGAGGCTCGGGAGATCCGCATGCGAGAACTGGAACGTCAGCAACGGGAACAGGAGGATCATGCTGACAAGGCGTATGATATGTATACAGAGACCGTGGGACGGAGAACGGGCAGTCGGCTAGCGGCGCTAAGTCCGAGCTCCCTGCATTCGCCGCGACGTAGCTCAGAGGACTCCGACGATGTACTCAGTATGAAGGATCTTAGGcATGAATTAAAAGAAGTAGAGGAGAAGTTCAGAAAGGCGATGATTTTAAACGCCCAGTTGGATAACGACAAGGCTGCGCTCGGGTACCAATTGGAATTACTCAAAGATAGGATAGAAGAATTACAAGAAGAATATGCCCAACTACAGAGGGAACACAAAGAGAAATGCTCGAGTCACGAGCGGTTGAAGCGCGAGCACGCGACGCTAGAGCGGGAAGTGACGCAGGCCCGCGACGCCGTCCNNNNNNNCGGGACTCCGCCGCCGGCGCCGCGGGCTTCGTGTTTATGGAGGCCGCCTGCGCACCCGCCACGCCCGCAACTGTTGAACGACGCCGGGGAGGGGACGCTAGATGTACGGTTGCAAAACTTAGTGAGTTCGAAGCAAGCTCTAGAGTCTGAGGTCCGCAAGCTGAAGCTGCAGTTGAACGACGAACGTGCGGCGCGACAGAACGGTGTCACCTCACAACATGACCGGGACATTGATAATGAACTGGAGAGTCTCCGCAAGGCGGTATCGGAGGCGAAGGGTCGCGCGGCGCGGGCGGAGGCGGAGGCGGCGCTGCAGGCGGCCGGGGTGGCGCGGCTGGAGGCCCAGGTCGCCCGCCTAAGGGCCGCCGCCGACCTCAGCGACGAGAGGGAGGAGGCGCTCAAGGGGGACAAGCGTCGGTTGCAGCGGGAGgCAAGAGAAGCTCTCAATCGGGTAGAAGAGTTAGAGACGGAAAATAGTCACCTAACGAAGCGGCTAGACAAACTGAAGAACGCAAAGTCAGCACTTCTCAAGGACCTGTGA
- Protein Sequence
- MGNRSEQATPENSDEESGDAFTDGDFGDSDDETIIERGPESKSLPINETINTEILEETRLNGIEKMNGHDEVENVNVEGKTEMNGFSDDSLLDLRRDSHSDAGSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYTETVGRRTGSRLAALSPSSLHSPRRSSEDSDDVLSMKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHATLEREVTQARDAVXXXGTPPPAPRASCLWRPPAHPPRPQLLNDAGEGTLDVRLQNLVSSKQALESEVRKLKLQLNDERAARQNGVTSQHDRDIDNELESLRKAVSEAKGRAARAEAEAALQAAGVARLEAQVARLRAAADLSDEREEALKGDKRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -