Cnem005225.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01010721.1:2892-4712[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-08 8e-06 26.1 0.0 1 37 10 45 10 51 0.91
Sequence Information
- Coding Sequence
- ATGTCCAAGAGACCAATCCACCAATACAAAGAGGAACAATTGACAGACGCTATGGCGGCGATTAGAAAAGGTATGAAAATTAGAGAAGCCAGTCGAGTTTTTAAGGTTCCGCGAGGGACTTTACAGGATCGACTACATTTAAGGGTTCCAGATTTGCCCCGTAAAATGGGACCAGATTCAGTGCTGACGATATCTGAAGAAACTGCATTGAAAGACTGGTGTATCGCATTAGCGAAATGTGGCTTCCCAGTAAAACGCGATGATCTCCTTAATACCGTCCATAATATTATATCTGAAGATAAAAGACCAAACCCATTTGTAAATAATAGACCAGGGAAGAAATGGTATCAATCATTTCTGAGACGAAATCCGGAGTTAAGTGAGAGGACACCTGAAAATATATCTAAAGGTCGAGCCGCTGTAACTGAAGAAGGTATTAGGAAGTGGTTTGCTGAACTTATAAAACATTTAGAAGATATAAACGCAAGCGACATTTTGACTGATCCTGAGAGAATATTTAACGGTGACGAAACTAGTTTTTATATTTGCCCCAAGACTGGAAAAGTCATTGCACCAAGAGGTTATAAAAACGTCTATCAAATTGTAAAAGGCAAGGAAAAAGAAGCTGTTACTGTCCTAATATTTATATCAGCATCAGGGAAAATTTTACCTCCTTGTGTAGTTTTTCCATACGTAAGACCACCAAAAGATGTTATTAACAGTATACCTGATAGATGGTTACTGGGAAAGTCAGAAACAGGTTGGATGAAATCAGAAATATTTTACGATTATATTGTTAAAGGTCTGAACGAATGGGTAAAaggagaaaaaataataaaacctgTTCTCGTTTTTGTTGATGGCCACAAGAGCAACTTAACAATGCGTCTCAGCGAATATTGTGACGATAACGTTATCATCCTTTATGCGCTTCCACCAAATGCAACACATTTGATTCAGCCGGCTGATGTAAGTGTATTTAAACCTTTCAAAGTAGAATGGAAAAATACCGTTTACGAATGGGCAACTCAACCTGAAAATGTCAATAGTGTTTTGACCAAGGCAACATTTTGTCCATTACTTAAAAAGGTCTTagagaaagaaaatttgaatagaACTATTATGAATGGTTTTCGCAAATGTGGATTATACCCATGCGATCCCAATGCTTTGGATTACTCGAAATGTGTTCAGAATAATCTTGAAAAACATCATAATGCTACCAGGAATTCGAAATCACCAGGTACCAAAATTAAGAACAGGCATTTAAATACCGCCATCAAGTGTATTAATCATCTAAGTAATGAGCTAGAAAATGCTGGAGTACACACAGTAACTGTTATCAATATTTTGAGTTCGGCTATTAAAATGACTGGACCTGAAAGTTTAAACTCAACAAAAAACTCAACTGTAGACTCCAAGAATGACAACATTTCCACCTgtggtattaataaaaatcaatcaataacATCAGAACTAAATGAAATTATTGACATCAGTTTACCAGTCATAGGTGATTACACATtggaaaataatataagtacctTTACAGAAGAAGAGGTATCGTCGAACAAATTTGAAATCGTAACCGAAATTCCACTGATTCAACAAAATGGTGAAATTCAAGTTAAAACACCAATATTTACTTCAAATGATCAAAATAGCGACTGCATTAAGGAACAGCCCACTAATCAAACATCGAAATCAATTTctgaaaaacaaaagaaaaacacaaAAGTAGGAATAAGTACTAATCATGATATAAttgataaagaaaataaaaatgttggacaacaaatatatacttacttacttacatag
- Protein Sequence
- MSKRPIHQYKEEQLTDAMAAIRKGMKIREASRVFKVPRGTLQDRLHLRVPDLPRKMGPDSVLTISEETALKDWCIALAKCGFPVKRDDLLNTVHNIISEDKRPNPFVNNRPGKKWYQSFLRRNPELSERTPENISKGRAAVTEEGIRKWFAELIKHLEDINASDILTDPERIFNGDETSFYICPKTGKVIAPRGYKNVYQIVKGKEKEAVTVLIFISASGKILPPCVVFPYVRPPKDVINSIPDRWLLGKSETGWMKSEIFYDYIVKGLNEWVKGEKIIKPVLVFVDGHKSNLTMRLSEYCDDNVIILYALPPNATHLIQPADVSVFKPFKVEWKNTVYEWATQPENVNSVLTKATFCPLLKKVLEKENLNRTIMNGFRKCGLYPCDPNALDYSKCVQNNLEKHHNATRNSKSPGTKIKNRHLNTAIKCINHLSNELENAGVHTVTVINILSSAIKMTGPESLNSTKNSTVDSKNDNISTCGINKNQSITSELNEIIDISLPVIGDYTLENNISTFTEEEVSSNKFEIVTEIPLIQQNGEIQVKTPIFTSNDQNSDCIKEQPTNQTSKSISEKQKKNTKVGISTNHDIIDKENKNVGQQIYTYLLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00256846; iTF_00255797; iTF_01140148; iTF_00801751; iTF_00947831; iTF_01197654; iTF_00418910; iTF_00276297;
- 90% Identity
- iTF_00408395;
- 80% Identity
- -