Cnem002462.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01002611.1:252544-252846[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-09 5.7e-07 29.8 0.0 3 36 16 49 15 55 0.91
Sequence Information
- Coding Sequence
- ATGCCTCGAAACTACCAACGTAAAACGGTAACAAAATATAACGTGGAAGATCTAAAAAGGGCCATTGAAGATGTTAAGAGCAAAAAGTTAACCTTAGGCAAAGCGTCTACTGTATATTCGGTGCCTAAAACCACAATATTTGACCACATGAAGAAGATGGTCATTAAACAACCAAGGTGTGGGAGAAAATCCGTCTTCTCGGATCTTCAAGAATTGGAACTAGAAAACCACATTATAAATTGCAGTAAACTGTTTTACGGATTAACCATAAATATGGTTcgtaaaattgcatttttaggCTAG
- Protein Sequence
- MPRNYQRKTVTKYNVEDLKRAIEDVKSKKLTLGKASTVYSVPKTTIFDHMKKMVIKQPRCGRKSVFSDLQELELENHIINCSKLFYGLTINMVRKIAFLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357393;
- 90% Identity
- iTF_00357393;
- 80% Identity
- iTF_00357393; iTF_00357394; iTF_00357395; iTF_00357396; iTF_00357397;