Cnem016789.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01004521.1:4923-5537[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-12 8.1e-10 38.9 0.0 5 41 26 63 22 65 0.92
Sequence Information
- Coding Sequence
- ATGCCTCGAAAAAAAACCACTAAAGAGCCAGGTGTTCGCAAATATGGCACCATATCTAATTACACACAGAATATGTTAGAAGAAGCCCTAAACAAAATAAGGTCAGGTGCATTAAGTCAGAGAAAGGCttgcaaaatgtataaaatacctAAAAGCACAATAAAtctcaaactaaaaaataaacacaataaatctGTGGGACGACCAACATGCTTATCCATGGCTGAGGAAATAATTTTCAGAGACCACTTGCTTGCGCTAAGTGACTTGGGTATTCCAATTGGCCTTCAAGATTTTAGGGACGTAATAAAAAGATACCTAGATAACATTGGTAAAACTGTTCCAGTGTTCAAAGATAACAGCCCCGGGTATGATTGGGCAAAACTTTACCTAGAACGCCATCcaactttaaaagaaaaaatagctCACAAGATCTCCAGGAAGCGAGCTCAAGTAAATGAAGACAtgataaacgatttttttgacAGGCTAGAAAAAGAAATTGAAGGTGTTAGCCCTGACAACATTTATAACATGGACGAAAGTGGTTTCCATGATGACCctggaaaaaaaaacttttattcagACGTTCCACTCGTCACCCAGAACAAGTAA
- Protein Sequence
- MPRKKTTKEPGVRKYGTISNYTQNMLEEALNKIRSGALSQRKACKMYKIPKSTINLKLKNKHNKSVGRPTCLSMAEEIIFRDHLLALSDLGIPIGLQDFRDVIKRYLDNIGKTVPVFKDNSPGYDWAKLYLERHPTLKEKIAHKISRKRAQVNEDMINDFFDRLEKEIEGVSPDNIYNMDESGFHDDPGKKNFYSDVPLVTQNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00034628;
- 90% Identity
- iTF_00255749;
- 80% Identity
- -