Agen037633.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000513.1:633464-633997[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.5e-12 8.5e-09 36.8 0.0 3 41 24 63 22 64 0.91
Sequence Information
- Coding Sequence
- atgccacggaaaaaaatcataaaagagCCAGGTGTGCGAAAATATGGCACTATCTCAAATTATACGAAGGAGGTATTAGAGGAAGCTATGAATAAAATAAGATCAGGTGCATTAAGTCAAAGGAAAGCTtgcaaaatgtataaaatacctAAAAGCACAATTAAtcttaaacttaaaaataaacacaACAAACCTGTGGGACGTCCTACATGCTTGACCTTGGACGAAGAGATAATTTTCAGAGACCATTTGCTTGCACTTAGTGATATAGGTATTCCAATAGGCTTGCAAGATTTCAGAGATGTAGTTAAAAGATACTTAGATAACATCGGCAAAACAGTTTCTGTGTTTAAAGACAACAGCCCTGGATACGAGTGGGCAAAACTTTACATGGAACGACATCCAgctataaaagaaaaaatagctCACAAAATATCGAGAAAACGAGCGCAAGTAAATGCTGAAATGGTAAGCGAGTTCTTCGATAGGCTGGAAAAAGAGATTAAAGACGTAAGCCCCGACAAtccttactaa
- Protein Sequence
- MPRKKIIKEPGVRKYGTISNYTKEVLEEAMNKIRSGALSQRKACKMYKIPKSTINLKLKNKHNKPVGRPTCLTLDEEIIFRDHLLALSDIGIPIGLQDFRDVVKRYLDNIGKTVSVFKDNSPGYEWAKLYMERHPAIKEKIAHKISRKRAQVNAEMVSEFFDRLEKEIKDVSPDNPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00404806; iTF_00162447; iTF_00212357; iTF_00255749; iTF_00255748; iTF_01182642; iTF_01171394; iTF_01182641;
- 90% Identity
- iTF_00162447;
- 80% Identity
- -