Cpyg005607.1
Basic Information
- Insect
- Calameuta pygmaea
- Gene Symbol
- -
- Assembly
- GCA_031762395.1
- Location
- JASANN010000266.1:3866606-3873015[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.5e-16 2e-12 46.6 0.2 10 70 269 327 263 332 0.87
Sequence Information
- Coding Sequence
- ATGGAGGGTGCCGACGTGAATGGCGGGAACGTCCAAGTGGCGCGAGAAGATCCTAACCTAGACATCCTGGATACGCCAGGATCACAGGAAGAGGTTGTAAGCCAGAAATCAGATAGTGGTAAGATGGATGAGCAAGAAATCAATGGCGATGTTAAGATTGCTATTAAGAGAGAGACTACCCCAAGCGCTAGAAGAAAGTTGCGCAAGTTCAAGGCCAACTCAACTAGTACCATCGAAAGTGACTCCAAACCTCAGACCAGAGGTTACAAAAGAAAGCTGTCTGATCCGGATGAAAATAGTTCTGAGGAGTCCACAGAATTTAATGGCTTTGATTCGCAGGGCATAGAGGATACAGATACAGGCAGTCACGTTCTTAAAAAACTTATTGCTGAAGCTGAGTCCGCAGAGTCTCAAATAAAGCTTCGACGTCGTTCAGGGTCAAGAACGATGTTCAGAACCATCAACGGTAAGATTCGAAAAGGTGCGCATATTAAACATATACTTAATAACAATCTACCCATTAACAAATGTTTAGAGTTCGTCGACATTCAtaatattaagaaagaaaaggattcCGACAAGTCTGAGACGGATTCGATAGGCGCTCCGAATAGTCTCGAGTCTGAGTCGGAAGCGGTAAAAGGTGACGAATCCTTGTTAAAATCGGCAAATTCAACCGCGCACAGTAGTCCCTTGATTTTATCTCAAAGATCAAAAGGCAGTCGATTATCTCGGGGTGCGAGTCCTGGTAGTGCGATAAAACATAAAGTCTCCGTAGACATGTCCAATCCGGCGTTTAAGGAGCCATTCAAGTACGGCTGGAGGCGAGAACTAGTATTCAGAGCGACCTCCGAGAACAGCGTCAAAAGAATGGCCGACATTTACTACTACACACCAAAGGGCAAGAAAGTCAGAAGTTTTCGAGAAGTCGCCGAATATCTGACATCCAGCAACTTGACGATAGACAACTTCACCTTCTTCAAGGAGCCAATCGGTATGGACGATCCGGAAAAGGAAATCATTCGAGATGCCAAGAGACCAAGGGATTCGATGACACCTTTAGCCAGGAAGACGTTCGCCAGTAAGAGATCGTTACCGGCGAAAAAGCCGGTCGAAGAGCCACCAGCAACGCCGACGCCACCGCGACCAGTTGGCAGACCCAAAGGTTCTGGCTCCGGTTTCAAAGTCAAGCTACCTGGCAAGAGAGGACCGCAGAAAAAAGTGAAGACGCCGCCGGAAGAGAGCGAAATGCTTCCACCGCAGTGGAGTTCACCCGTGACACCAAGACGCAACCAGCAGCCTATCGAAAAGACGCCACCTGCCAAGCCTAAGAGAGCACTGAAGGCCAAACTTCAGGAACCGTGCAGCATAAGATGTTCAACGAGCATGGGCCTCATACCCAGCTTGCAATGCTCAGTCTGCCTGTGTTTGTATCATCCGGAGTGCGTCGGTGGAAAGGATTACGTCGCCAGCGACGATTACGTCTGCAAGaaTTGTCAACAGGAGACCGTGGAGACGCAGCCGGCTCAGCATCCCACGATGACTCCCTCCCTCACGCCTCCGCCATTAATTCCGATAAGTATGCTCGGGGCGCAAAATGCAAAAACGAAACACGGAGCGAACATGACGCCGCCGAAGTtacaaagaattccgaaagcCGAGGGCGCGGACGCCGCGCAGGCACAGACGCAGGCGCAGCAAAGGGCAGCTTCAAAGTCTCCGAAACCCGTGACAATACCGAAAGTTTCTTCTACCccggaaaagaaagaatccaCATGGTACGCGCAGGCGCGAAACGAATATTTACACAGTCACGATGGCTCCTTGCCGAAGCCAGCTCAGAACATTGCTCTGATGGCCGGCAAGAAATATATCGTAGTGCCGAAGAACAATGCAATGGCCGTGCAGCCGGCAATCACTGTCAAGCCCGAGAAGATTGGCGACAAACCGCCAATCTTGCACGACAGCTCGATCACTGACATTTCCAATACCACCGAGATGTCCTTGACCTCCAGGATACCGACTGCTAGATCTTCGGCAGAGACcgaggtcaaagttcaacTGGACAAGTCAATTAGCAATGAAAGTATAAACATGCCGGAGAGTCCGGTCAACGAAACTCCCAGTGTGTCCGTAGCTGAATTGGACGAGACTGTGACGGATGAGGATGAGAAAATGGAAACGGAAGTTGGCCAAATTTCCGAAGGCCTTCCGGTTTCCGCCAATCAAGTCAGTGACGTAACGTCGAATGAAACTGACGGCGACGCCATCGAATCTATTTCGGCTGTGAAAGATTCTGAACCGGAATCAAAGAGaaatgaggaggaggaggaggaggaggaggaggaggaggaggataaAGAGTCTCGGGAGGAGACGCGCGAGTCCGCTATTCCTAGTTCCTTGGAAAGTCAAGATAATGTTAATAGAAGGGAAAGCGACTCCGTTAAGGTCGACGATAGCGTCGTGACGACTAGCGTCGCTACTGTACAGTCTGACAGCAAAAAGCGACAAGTAACGGTGGAAACGGATCAGAGGCAACACTTCATGGTGTCGGTGTGCGCGGGTTACCACGCCCTGTCCCGCATCTTCCAGTACCTCAAGGTGCAGGAGCTCCTGCGGGCAGCGCGTGTCTGCAAAATGTGGCGAGATCTGGCGGCACATCCTGCTTTGTGGAAGACCGTGCGCATGAAGAACAGCCAGGTAACCGATTGGGATGGCCTGGCGGACTCCTTGAACAGACGCGGCACCCAGCACCTCGACCTGAGGAAGATGCTCGTCGCCGGGGAATCTGAGTGCATTTGGAAGAAATTCGTCTCGGTGATACCACGCGTTACCAGCCTCCTGAAGTTAGAATTATGTCGCTGTCCTGTGATGGTCGTCGAGGAAGTCATCAAGAGCTGTCCCCAGCTTCAGGTGCTCAGCGCCATGTCGATAAAGTGCGACTCCCTCAGCCTGGAATCCGTCGGGAACCTCAAACGCTGTCAAGAGCTGCGACTCAAAGCTATTAACGGGATGTCTCTGAAAGGAGACCTGTCGCCGTTGCAGGATCTGACTACCTTAACACACTTGAGTTTAACGTCCGTTAAGGAATTGGGCAAGAAGAGGATCGAGATTCTGGAGTCCCTTACGAATCTTGAGACCCTGGAGCTTGGCGAGTGCTCTgattttcctgaaaaattcGGCACTGCTATCCTGACGAAGCTCCACAAGCTGGAGAGACTCAGATTGGAAAAGGGTCAAGGTTCATGTTGTACCTTTGATATCCTCGAAGGTATATCCAGACTGCCTAGTTTGGTTCAACTGGAACTGGTGAACTTTGACGTGAAGAATGGATTCGACAAGTGTCTTGCCAATTGCAAGAACATCAAGAGACTTTTGATAATACCAACTTATATATCCCAGTCGGCTACCTCGAACAACATGGTTCTTGGCGGAGTCACGGAactgtcaaataatttaacacaCTTTGTCTGGGGTGTCACCTTGGAATTGCTTAGGGTCACTGAGCTTTTCGTTGATCAGTGTAATCAAATGAGCAAACAAATCACTGGCGATTCCATACCCGTATTAAAGCCAGTACCCTGCTTGAAGTTGATTGAAGACGTCGAGGAAGAGGAAACTTCAAAATCTGATGACAAACAGCCAAACTTAACGAATCCCCAGGTGGATATTCTGCCCTTGCCGCAATTGCAGAAGCTTTTGTTAACAGCCTTACCGAAGACGAGGGTCAAGATCTTGAAGATACCTTTCCATGCCACCTGGAGGCAGAGCATTTCAGACAGTACCACTCAGTAA
- Protein Sequence
- MEGADVNGGNVQVAREDPNLDILDTPGSQEEVVSQKSDSGKMDEQEINGDVKIAIKRETTPSARRKLRKFKANSTSTIESDSKPQTRGYKRKLSDPDENSSEESTEFNGFDSQGIEDTDTGSHVLKKLIAEAESAESQIKLRRRSGSRTMFRTINGKIRKGAHIKHILNNNLPINKCLEFVDIHNIKKEKDSDKSETDSIGAPNSLESESEAVKGDESLLKSANSTAHSSPLILSQRSKGSRLSRGASPGSAIKHKVSVDMSNPAFKEPFKYGWRRELVFRATSENSVKRMADIYYYTPKGKKVRSFREVAEYLTSSNLTIDNFTFFKEPIGMDDPEKEIIRDAKRPRDSMTPLARKTFASKRSLPAKKPVEEPPATPTPPRPVGRPKGSGSGFKVKLPGKRGPQKKVKTPPEESEMLPPQWSSPVTPRRNQQPIEKTPPAKPKRALKAKLQEPCSIRCSTSMGLIPSLQCSVCLCLYHPECVGGKDYVASDDYVCKNCQQETVETQPAQHPTMTPSLTPPPLIPISMLGAQNAKTKHGANMTPPKLQRIPKAEGADAAQAQTQAQQRAASKSPKPVTIPKVSSTPEKKESTWYAQARNEYLHSHDGSLPKPAQNIALMAGKKYIVVPKNNAMAVQPAITVKPEKIGDKPPILHDSSITDISNTTEMSLTSRIPTARSSAETEVKVQLDKSISNESINMPESPVNETPSVSVAELDETVTDEDEKMETEVGQISEGLPVSANQVSDVTSNETDGDAIESISAVKDSEPESKRNEEEEEEEEEEEEDKESREETRESAIPSSLESQDNVNRRESDSVKVDDSVVTTSVATVQSDSKKRQVTVETDQRQHFMVSVCAGYHALSRIFQYLKVQELLRAARVCKMWRDLAAHPALWKTVRMKNSQVTDWDGLADSLNRRGTQHLDLRKMLVAGESECIWKKFVSVIPRVTSLLKLELCRCPVMVVEEVIKSCPQLQVLSAMSIKCDSLSLESVGNLKRCQELRLKAINGMSLKGDLSPLQDLTTLTHLSLTSVKELGKKRIEILESLTNLETLELGECSDFPEKFGTAILTKLHKLERLRLEKGQGSCCTFDILEGISRLPSLVQLELVNFDVKNGFDKCLANCKNIKRLLIIPTYISQSATSNNMVLGGVTELSNNLTHFVWGVTLELLRVTELFVDQCNQMSKQITGDSIPVLKPVPCLKLIEDVEEEETSKSDDKQPNLTNPQVDILPLPQLQKLLLTALPKTRVKILKIPFHATWRQSISDSTTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00252818; iTF_00770373; iTF_00298312; iTF_01198666; iTF_01199406; iTF_00296781; iTF_00292271; iTF_00297552; iTF_00295249; iTF_00296017; iTF_00291538; iTF_00292949; iTF_01395125; iTF_00254326; iTF_01474689; iTF_00252071; iTF_00293722; iTF_01473180; iTF_01473927; iTF_01475452; iTF_01130815; iTF_00253568;
- 90% Identity
- iTF_01474689;
- 80% Identity
- iTF_00252818;