Cpyg007575.1
Basic Information
- Insect
- Calameuta pygmaea
- Gene Symbol
- -
- Assembly
- GCA_031762395.1
- Location
- JASANN010000338.1:41531-43421[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-09 1.2e-06 28.1 0.0 6 38 15 47 13 50 0.93 2 2 8.5 8.2e+03 -3.3 0.0 35 45 117 127 116 127 0.81
Sequence Information
- Coding Sequence
- ATGCCAAAAGTGGCGAGAAAAAAGTATACGCAATCTAGTGTGGAACGTGCATTGACCGAAATACAATCTGATATGTCAATACGAGTAGCAGCATCAACGTACAGCGTCCCAAAAAGTACTCTACATGGAAAAGCCAAAAATCCCCACCTCCTGAATGCTACGATAGGTCCGGCTATTATCCTCACTGCGAAGGAAGAGACTCAATTGGTGAAATGGACCTTACACCTAAGCGAGACCGGATTCCCTATCAACAAGAACCAGCTACTGGACAGTGTGAAACTAATAGtggaaaaaatacaaaggcCTACACCATTCACCAATAATCGTTCAGGTCGTCACTGGTATGAGAGCTTCCTTCGTCGGCATCCCGAGCTGAGTCAACGTGCTGCACAAAATCTAACGTATACCCGAGCCTCGGCTACTGAATACAAATTGAGAAATTTGTTCAGCGAGGTCTCCGAGTACTTACAGCGGAAGAACCTGCTCAATATCGAAGCTTCGAGGATCTTCAAATGCGACGAAACAGCCTTTCTTCTATGTCCGAAAGCAGATAATGTTATTGTACGCAAAGGGGCCAAATCTGTCTACAAAATTGTCGACGGAGATGAAAAAGAGTGCCTGACAATGGTTTTCGTGGTCAATGCAGAAGGCACCATGGTTCCTCCTCTCGTCATGTACTGGTACCAAAGAATACCCAACAGTGCCTCTGCAAATTTTCCAAGTGACTGGAGCATTGGTACTTTGGATAAAGGCTGGATGACAGCTGAAAccttttatgaatttataaCCTCTAGACGTTGCTGTGTTTCATCCGATGAAGACTCTGCGTGGAAGAAGGCTGTTACCAGGTGGAGAATCGATCGTGGCGGAACACGTTTAAACAAAGAGATGCTCGCACCAGTTTTAAAAGCAACAATAGAGTCCCTCGAGCTAACAGAAGTTGTCGAAATTCTGCACGAAGATTTTGGAGTCGCCGAGAACAGCTGGGTGGAAGTCGCCGAAAAGAGCTTGGTCGAAGTTGACGAGGAGAGCCGGGTGGATGTCGCTGAGAAAAACTGGATGGAAGTCGCCACGAGAAGCGTGCTCGAAGACGTCGAGAAAATCGCAATGATGACTCCGCGAAAAACATGGACTTAG
- Protein Sequence
- MPKVARKKYTQSSVERALTEIQSDMSIRVAASTYSVPKSTLHGKAKNPHLLNATIGPAIILTAKEETQLVKWTLHLSETGFPINKNQLLDSVKLIVEKIQRPTPFTNNRSGRHWYESFLRRHPELSQRAAQNLTYTRASATEYKLRNLFSEVSEYLQRKNLLNIEASRIFKCDETAFLLCPKADNVIVRKGAKSVYKIVDGDEKECLTMVFVVNAEGTMVPPLVMYWYQRIPNSASANFPSDWSIGTLDKGWMTAETFYEFITSRRCCVSSDEDSAWKKAVTRWRIDRGGTRLNKEMLAPVLKATIESLELTEVVEILHEDFGVAENSWVEVAEKSLVEVDEESRVDVAEKNWMEVATRSVLEDVEKIAMMTPRKTWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00252737;
- 90% Identity
- -
- 80% Identity
- -