Cfil007563.1
Basic Information
- Insect
- Calameuta filum
- Gene Symbol
- -
- Assembly
- GCA_031763695.1
- Location
- JARPRI010000338.1:41531-43421[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-09 1.4e-06 27.9 0.0 6 38 15 47 13 50 0.93 2 2 9.4 9.1e+03 -3.5 0.0 35 45 117 127 116 127 0.81
Sequence Information
- Coding Sequence
- ATGCCAAAAGTGGCGAGAAAAAAGTATACGCAATCTAGTGTGGAACGTGCATTGACCGAAATACAATCTGATATGTCAATACGAGTAGCAGCATCAACGTACAGCGTCCCAAAAAGTACTCTACATGGAAAAGCCAAAAATCCCCACCTCCTGAATGCTACGATAGGTCCGGCTATTATCCTCACTGCGAAGGAAGAGACTCAATTGGTGAAATGGACCTTACACCTAAGCGAGACCGGATTCCCTATCAACAAGAACCAGCTACTGGACAGTGTGAAACTAATAGtggaaaaaatacaaaggcCTACACCATTCACCAATAATCGTTCAGGTCGTCACTGGTATGAGAGCTTCCTTCGTCGGCATCCCGAGCTGAGTCAACGTGCTGCACAAAATCTAACGTATACCCGAGCCTCGGCTACTGAATACAAATTGAGAAATTTGTTCAGCGAGGTCTCCGAGTACTTACAGCGGAAGAACCTGCTCAATATCGAAGCTTCGAGGATCTTCAAATGCGACGAAACAGCCTTTCTTCTATGTCCGAAAGCAGATAATGTTATTGTACGCAAAGGGGCCAAATCTGTCTACAAAATTGTCGACGGAGATGAAAAAGAGTGCCTGACAATGGTTTTCGTGGTCAATGCAGAAGGCACCATGGTTCCTCCTCTCGTCATGTACTGGTACCAAAGAATACCCAACAGTGCCTCTGCAAATTTTCCAAGTGACTGGAGCATTGGTACTTTGGATAAAGGCTGGATGACAGCTGAAAccttttatgaatttataagtAATAGTGATGATTCCAGGGATTCACAGGTGTCTGAAACCCCAGCTGAAAGTGAACGAATCAAGTTCATGGAGTTTTTCGAAGACCAGCTGTCCGAGGATCTACTCAAAGCTTTCAAGCAAACAGAATTAACTGCAAATTGGATGGCTGACGTGATGCAAAAAACGCTCTTCGAAGTTTGGCTACAATATAAGAACTCACTGGTTTACATTTACAGTAATGTAAACTTGTGGACCTTGGGTTTTTATTGTTGTCTTGCAGAAGTTGTCGAAATTCTGCACGAAGATTTTGGAGTCGCCGAGAACAGCTGGGTGGAAGTCGCCGAAAAGAGCTTGGTCGAAGTTGACGAGGAGAGCCGGGTGGATGTCGCTGAGAAAAACTGGATGGAAGTCGCCACGAGAAGCGTGCTCGAAGACGTCGAGAAAATCGCAATGATGACTCCGCGAAAAACATGGACTTAG
- Protein Sequence
- MPKVARKKYTQSSVERALTEIQSDMSIRVAASTYSVPKSTLHGKAKNPHLLNATIGPAIILTAKEETQLVKWTLHLSETGFPINKNQLLDSVKLIVEKIQRPTPFTNNRSGRHWYESFLRRHPELSQRAAQNLTYTRASATEYKLRNLFSEVSEYLQRKNLLNIEASRIFKCDETAFLLCPKADNVIVRKGAKSVYKIVDGDEKECLTMVFVVNAEGTMVPPLVMYWYQRIPNSASANFPSDWSIGTLDKGWMTAETFYEFISNSDDSRDSQVSETPAESERIKFMEFFEDQLSEDLLKAFKQTELTANWMADVMQKTLFEVWLQYKNSLVYIYSNVNLWTLGFYCCLAEVVEILHEDFGVAENSWVEVAEKSLVEVDEESRVDVAEKNWMEVATRSVLEDVEKIAMMTPRKTWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00255002;
- 90% Identity
- -
- 80% Identity
- -