Cpal011857.1
Basic Information
- Insect
- Calameuta pallipes
- Gene Symbol
- -
- Assembly
- GCA_030142375.1
- Location
- JARQSW010000687.1:59352-59976[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-26 4e-22 78.3 15.0 2 70 44 112 43 112 0.96
Sequence Information
- Coding Sequence
- ATGGACAAGCAAGGACCTCCGCCTCCTGGGTTTGTACCGCCTCCACCATATTCAGGACCACCGCCAACTGCGCCGGGACATATGGGACAGCCGAACATAATTATCATGCATAATCCAGCTTTGGGGCCAGAAACACAGCTTATGACATGTCCGCACTGTCACACCAATATATCTACAAGAGTTGTACAAGAATCAAGTACAAAGACACATCTCTTCGCTCTACTGCTCTGTTTAATGGGatgCTGGCCATGTGCTCCTTGCCCTTATTGTATGGACTCTTGCCTTGCAACGAAGCACTATTGTCCAGCCTGTAATGCATTTCTGGGTCAGTACGACAATTAA
- Protein Sequence
- MDKQGPPPPGFVPPPPYSGPPPTAPGHMGQPNIIIMHNPALGPETQLMTCPHCHTNISTRVVQESSTKTHLFALLLCLMGCWPCAPCPYCMDSCLATKHYCPACNAFLGQYDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294914; iTF_00295682; iTF_00297219; iTF_00255494; iTF_00292614; iTF_00252488; iTF_00253992; iTF_00293389; iTF_01474352; iTF_01475123; iTF_00253237; iTF_01473591; iTF_00298744; iTF_00297978; iTF_00291965; iTF_00294142; iTF_00296446; iTF_01475872; iTF_01395526;
- 90% Identity
- iTF_00252488;
- 80% Identity
- -