Cpal008395.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calameuta pallipes
Gene Symbol
-
Assembly
GCA_030142375.1
Location
JARQSW010000489.1:1851841-1857012[+]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00053 0.62 10.3 2.2 5 44 33 68 29 68 0.80
2 11 0.17 2e+02 2.3 1.2 17 29 75 87 69 99 0.82
3 11 0.11 1.3e+02 2.9 0.4 17 31 104 118 91 124 0.79
4 11 0.00014 0.17 12.2 0.9 8 29 124 144 117 151 0.79
5 11 0.0004 0.46 10.8 0.1 18 40 160 179 147 182 0.89
6 11 0.18 2.1e+02 2.3 0.7 18 29 188 199 181 207 0.84
7 11 0.036 42 4.5 2.5 10 41 209 236 204 238 0.79
8 11 0.077 89 3.4 1.7 3 29 230 255 228 263 0.75
9 11 0.0032 3.7 7.9 0.7 5 44 260 295 256 295 0.84
10 11 0.017 19 5.6 0.1 16 41 301 323 297 326 0.87
11 11 0.0016 1.8 8.8 2.4 15 43 328 353 323 354 0.86

Sequence Information

Coding Sequence
ATGGATGTCACTATAGTATTAGAGGGACATAAATCTGATCAACTTAGTAATATTGGATCCAGCGATAAGCAACAAGTAAGAGTAGAGAAGCATTATAAATACAGCCATGAAAACGCCTCAGAAAATCTACAAGGTTGCAATGCATGTGgcaaagaattaaataatctaaaaGCTCTAAGGACTCACATTAAAATGAAACATAGCCAAAGTAACAGGCAAGGATTTCGCTGTCGCCTCTGTGAAgagaaattccataaaaaagaGGACAGAAAGCTTCATTATGAGAAAATCCATTGTGGAGAGAGTCCATTCATATGCATGGATTGTGGAAAGGGATTCTCTAGTAAATCAGGACTATATGGTCATCGACAACTTCACAAAAAAGACCAACAATCCACTTGCCAATATTGTGGAAAAATCTTTAACAGGCGAGACAGCTATCACGAACACGTTCTTATCCATGTTGGTCCTCGGCATCGCTGTCCCTACTGTCCAAAAGAATTTGTGCAGCGTAGCAATCTCATACGTCATATACGAATTCATACAGGACAGAAACCATATTCCTGCACCTTTTGTGAGAAACGCTTCTCCGACAAGGGTGCTTGTAATTCGCATATTCGGGTTCATACAAAGGAGGAGCAATGTGCCTGCCCATATTGTGGTCAAGTTTTCACCAAGAAACAAAAGTTGAAATATCATATTCGCAAACATACTGGGGAAGGTTTATTGAGTTGTGAGATTTGTGCAAAAACTTTTACAAATACTTTTGCCTTGAAGGAGCACAGAACTATTCATGATAGGCAAACACAAATGATGTGTATAGAATGTGGAAGAGCTTTTAGTAATCAAAAATACCTGGAAAGACACATGGCTACTGTACATCCTGGTCCTgaatctttatcttttacctGTCCAATCTGTGATAAAGTTTTTCATCAACAGTCCAGACTAAAATACCACATCGTAACGCACACtgagaagaaatattttgattgtgAACTCTGTGGAAAACGCTATAGCACCAGAAAATCGATGCAAAATCATTTACAACGGTATCATGATCTCCAGAGTAATCGGGTGGAATATAAGAATGCTAAAACTAGTATGCTCGACGAAGTGGAATTGAAGACTACAGCAGGTGTTGATtggataacaaagaaaaatggattaGTTGTTAAAAATCTGCTTAATGGAAAGTGCGAGCAAGATGAAATTGGAACGCCAGACGGTgGGGTTCAGTCCCGCTATAAATACGGCCCTGAGAGTGGCTGTGCTTATAACCTGCCACCCGTATCCGAGGGAGACGCTAGCCAGTCGCCGAAGTAG
Protein Sequence
MDVTIVLEGHKSDQLSNIGSSDKQQVRVEKHYKYSHENASENLQGCNACGKELNNLKALRTHIKMKHSQSNRQGFRCRLCEEKFHKKEDRKLHYEKIHCGESPFICMDCGKGFSSKSGLYGHRQLHKKDQQSTCQYCGKIFNRRDSYHEHVLIHVGPRHRCPYCPKEFVQRSNLIRHIRIHTGQKPYSCTFCEKRFSDKGACNSHIRVHTKEEQCACPYCGQVFTKKQKLKYHIRKHTGEGLLSCEICAKTFTNTFALKEHRTIHDRQTQMMCIECGRAFSNQKYLERHMATVHPGPESLSFTCPICDKVFHQQSRLKYHIVTHTEKKYFDCELCGKRYSTRKSMQNHLQRYHDLQSNRVEYKNAKTSMLDEVELKTTAGVDWITKKNGLVVKNLLNGKCEQDEIGTPDGGVQSRYKYGPESGCAYNLPPVSEGDASQSPK