Cpal005583.1
Basic Information
- Insect
- Calameuta pallipes
- Gene Symbol
- -
- Assembly
- GCA_030142375.1
- Location
- JARQSW010000393.1:707432-707806[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-09 1.5e-06 28.0 0.2 6 41 35 69 30 73 0.87 2 2 7.3 7.6e+03 -3.1 0.0 2 10 78 86 77 87 0.75
Sequence Information
- Coding Sequence
- ATGTGTTCAAAAATAACAAGGAACACTCATGTATTAGTTAATTATTCAAGGAAAATTAAACAGAATAAAGTTAAGAGGAAGAATTATTCTTCTGAAAGTGTTAAGAATGCTTTAAAAGCTGTGGATAATGGCATTTCTATCAGAAAAGCTGCTGCTGCGTATGGGATTCCATTAGCCAGACTTGCGAGGAGGAAAAATCatcatattaaattcaaaacaaaGCCAGGAACTGATACAGTTTTAACAAAAGCTATTGAGCAAGATGTTGTTAATTGGATTCTATACAAAGCTGAACGAGGCCAGCCAGTTTTATGTGAAAATGAAGAGGCTAACCACACCATTTCTTCACAACTATCCTGGGCGACATTGGTTTGA
- Protein Sequence
- MCSKITRNTHVLVNYSRKIKQNKVKRKNYSSESVKNALKAVDNGISIRKAAAAYGIPLARLARRKNHHIKFKTKPGTDTVLTKAIEQDVVNWILYKAERGQPVLCENEEANHTISSQLSWATLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00295165;
- 90% Identity
- -
- 80% Identity
- -