Cido012469.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calameuta idolon
Gene Symbol
ttk
Assembly
GCA_030142285.1
Location
JARQSV010000709.1:1214682-1227919[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 1.3e-06 9.1e-05 22.8 2.5 1 23 582 604 582 604 0.98
2 8 1.9e-05 0.0014 19.0 1.5 1 23 610 632 610 632 0.98
3 8 1.9e-06 0.00014 22.2 0.3 2 23 641 662 641 662 0.98
4 8 7.7e-06 0.00056 20.3 0.1 1 23 668 690 668 690 0.98
5 8 2.1e-07 1.5e-05 25.2 3.0 1 23 696 718 696 718 0.98
6 8 4.3e-06 0.00031 21.1 2.1 1 23 724 746 724 746 0.98
7 8 7.8e-05 0.0056 17.1 7.7 1 23 752 774 752 774 0.98
8 8 9.6e-05 0.0069 16.8 1.5 1 21 780 800 780 801 0.95

Sequence Information

Coding Sequence
ATGATGGGCGAAGTAATAAGAGTTTCCGGCCGGGCACCGGACGTTGGGGATTTCTTGCGTGAGGCCATGATATCACAAAGATTTGCGGATGTTTCTTTATGCTGTCCCGGTGGACAAAGATTTCTTGCTCACCGTTTGGTACTTTCTGCCGCCAGTCCATATTTGCAAGAGGTCCTACTTGCGCACAGTCGTGCCACCGGACACTGCGAACCCATTACAATTATTCTGGCGGAGGTCGAGGGCCCCGAATTGGCGGCCATACTTGGTTTCGTGTATACCGGAAGCGCCGCGGTACCAAAGGGACGATTGGATGCCTTCCTAAGAGCCGCCAAGGCTCTGAGCATTAGATTGCCACCGCTACCGGAAATGATAACGTCTTGTATGGACGATTTCAAAGCGGAGGACTTTAAGGATGTCAAAGTGAACGCACGTTATCTTAGATGCGAGCAATATCCTTGTCATGACGGTTGGTGTCACGCGAGGACCTTCGACAGGAATTACTGTTCTCCAAATTACATGGACAAGTGTCATCGCGAGTTGCCGATGTCGTGTGAAggatcattaaataaaaaaatttgtaactcATCTAAGGACGAATCGCTCGATGCGTGTCCTGTTGGAATGACCGAGGCTCCTTACGCAACGAGAAGTACAAACGGCAGGATAATTTTGGAGAAGAATTTGAACCGACTGGATTACCCGAAGGAACCGGtgaacgaaagaatttttgaaaattcggaaAAAATCAGCGAATCTCATTCCTTCGTAAAGATCCCCGAGGCCAAGGACTTCTCAATGGGATTTCTGGGAGCTTCCGGGAAAATGATGGGAATTCACGAAATTCCCGGGAACATTCAAAATCCATCAAGGATCTATGAATCGTCGCGAGAGCCTGATCGCATCTTAGAAAATTTACTCGATTCGCGTCTTCCTACGATCCGATCCAAGGTCGAGCTTGAGGATCGACAAGTCTCTACGGTACAGATAGGCGAAGATTTAACCTGTCGCGAAAGATGCTGCAGATGGAAATATCAAAAGAGACACGTAGCCAACAGAGTCACAGCATCCCCATGGAGACAACTAGCTAGACCACATCATTCCCCAAAAATGCAACCGATAGTACTTCGAAATTATTCCGAAAGGaccGAATCGGGAATAACCCGCGATTTTGGGGCCGAACGATTCCCAGTGACTTCCGGTATTATTTCGAAGGACTCTTGCAGCACGATTATCGAAAAGCCGTGCGCATACGAAATGTTCGAATGCGAAAAACGAATTTCCggcgaatttgaaatttacatgagaaaAGACGAAACTATTTCACGTCAAGACTTTAGCTCAGGTCAGACGATCCTGGTGAACGTAACGAATCCGGAATGTAATTCTCAAAGTATCGGTGAAGTTTctaactattttcaaaattcaacccAAGCCGGGACACCCTCGCAGATTTTATTGTCTGCTGTCGAGAATCATGCGAAGTGCACCGACGGCATAGTAagcgcgggaattttgaataagAGTCCTACACCAACTTTAAAACCAGAACTGTCGTTACCTGTCAGTAGACTTTGCGACTCGACGCCCGATACGGCCAACACTGCAACTAGTACGATCACTGTTCCTACCGTGGATAACGAAAGACCAAATTCAATCGACAAAACTCACCGTAAGCACAGTGACAGTAACAACAACGAGGCGTCATCAGGCGATCATCGAATTCCCACAGTAAACACCGACGATCACAGATGCGATCAGTGTGGAAAGACTTTCGTGACCCGAGCCTCGTTAAAGGTACACAGTCGCACGCATTCGGGCGAAAAACCGTTCAGGTGCGCTGATTGCGGCAAGGAATTCTCGCAATTGCGAAACTACAAGTATCACCGCAGCGTGCACGAGGGTACGCGTGAGTTCGCAGCGACGTGTCCCGAGTGCGGTAAATACTTCAACGACCGTGGCTACCTGAGTTCGCACATGAAGATCCACCGTAATCGCAAGGAGTACGCATGCGGCGAGTGCGGTAAGAGTTTCAATCAGCGAGTGGCGTACAACATGCACGTGCGGATACACACTGGGGTGAAGCCGCACCAGTGCGATCAGTGCGGCAAGGCGTTCTCGCGGAAGATGCTGCTGAAGCAACATCTCAGGACGCACTCCGGCGAGCGTCCTTATCAGTGCCAGGTCTGTCACAAGGCATTTGCTGATCGATCGAATATGACCTTGCACACGAGGTTGCACTCGGGCCTCAAGCCTTATCAGTGCACATTGTGCACAAAGGCGTTCACAAAGAAACATCATCTCAAGACTCATCTGAATTATCATACGGGAACTAAACCGTACTCGTGTCCTAATTGTTCCTTGAGATTCTCACAGAGCAGCAACATGCGTACGCATTACAAAAAGTGTACAGTCAATAATCCTAGTGGGATACAGGCGAGCGCGGAACAGAGAGCCAACGATAAGGATACCGATACAGCATCACTGGTCCATGCGACCGGCAGAACCCGTAGCGCTGCACTTACGCCACCTAATTCGGATCAGGAATCCGGTATATATACGCCCGTAGGGAGAATCGTTACAGAAATTAGGCAATCTTAG
Protein Sequence
MMGEVIRVSGRAPDVGDFLREAMISQRFADVSLCCPGGQRFLAHRLVLSAASPYLQEVLLAHSRATGHCEPITIILAEVEGPELAAILGFVYTGSAAVPKGRLDAFLRAAKALSIRLPPLPEMITSCMDDFKAEDFKDVKVNARYLRCEQYPCHDGWCHARTFDRNYCSPNYMDKCHRELPMSCEGSLNKKICNSSKDESLDACPVGMTEAPYATRSTNGRIILEKNLNRLDYPKEPVNERIFENSEKISESHSFVKIPEAKDFSMGFLGASGKMMGIHEIPGNIQNPSRIYESSREPDRILENLLDSRLPTIRSKVELEDRQVSTVQIGEDLTCRERCCRWKYQKRHVANRVTASPWRQLARPHHSPKMQPIVLRNYSERTESGITRDFGAERFPVTSGIISKDSCSTIIEKPCAYEMFECEKRISGEFEIYMRKDETISRQDFSSGQTILVNVTNPECNSQSIGEVSNYFQNSTQAGTPSQILLSAVENHAKCTDGIVSAGILNKSPTPTLKPELSLPVSRLCDSTPDTANTATSTITVPTVDNERPNSIDKTHRKHSDSNNNEASSGDHRIPTVNTDDHRCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKEFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYACGECGKSFNQRVAYNMHVRIHTGVKPHQCDQCGKAFSRKMLLKQHLRTHSGERPYQCQVCHKAFADRSNMTLHTRLHSGLKPYQCTLCTKAFTKKHHLKTHLNYHTGTKPYSCPNCSLRFSQSSNMRTHYKKCTVNNPSGIQASAEQRANDKDTDTASLVHATGRTRSAALTPPNSDQESGIYTPVGRIVTEIRQS