Cind008059.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cacoxenus indagator
Gene Symbol
Trl
Assembly
GCA_035041755.1
Location
JAWNKX010000233.1:3016298-3025904[+]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.4e-43 1.7e-39 134.0 6.2 1 54 308 361 308 361 0.99
2 2 3 2.1e+04 -4.6 9.1 7 27 666 686 661 689 0.86

Sequence Information

Coding Sequence
ATGTCGTTGCCAATGAATTCATTGTACTCCCTGACGTGGGGGGACTACGGTACCTCACTCGTCTCGGCAATCCAATTGCTGCGCTGCCATGGTGATCTGGTGGATTGCACGTTAGCTGCTGGCGGCCGAAGTTTTCCAGCGCATAAAATTGTCCTGTGCGCCGCATCGCCATTCTTACTGGATTTGCTCAAGAATACACCATGCAAGCATCCAGTAGTAATGCTAGCGGGAGTAAATGCCAACGATTTGGAGGCATTGCTGGAGTTTGTTTATCGCGGTGAAGTGAGTGTTGATCACGCACAGCTGCCTTCGCTTTTGCAAGCGGCACAGTGTCTCAACATACAAGGACTCGCACCGCAAACGGTAACCAAGGATGACTACACAACGCACTCTATACAATTACAGCATATGATACCGCAACACCATCATGACCAGGACCAATTGATAGCGACCATTGCCACCGCCCCACAGCAGACCGTACATGCACAGGTTGTCGAGGATATACATCAAGCGGGCCAGATTTTGCAAGCAACGACTCAGACCAATGCCGccggacaacaacaaacgattGTGACCACCGATGGCTCGAAAGACGTTATACAACAATTCTTACCGGCGCGCAAACGCAAACCGCGCGTCAAGAAAATGTCACCATCGGCACCGAAAATCAGCAAAATTGATGGAATGGATACGATTATGGGCACACCGACTTCCTCACATAGCGGACAAGTACAAGTTGAGAACGGGGATGGCCAATTGATCACCTCGACGCCGCATATCAAAAGCGAGGTGGGCAAAGTGGAAACCATTGTGACAATGGACCCGAATAGCATGATACCCGTAACCTCTGCCCAGGCCGGCGATCTACAAAGTGGAGGCTCAGTAGCGGGTACGTCCAGTGGCAGTGGTGCCACCGGTACACCCAAAGCTAAACGCACTAAACATCCACCCGGCACGGAAAAACCACGATCACGCTCGCAATCGGAACAACCTGCTACATGCCCCATTTGCTATGCCGTAATACGTCAATCGCGTAACTTGCGTCGTCATTTGGAATTGCGGCATTTTGCAAAACCCGgcgtcaaaaaagaaaagaaaagtaagTCACCAACAGATAACGATTCATCTATGAACGCTTCGGATTTCAACACGACGGCGGAGTCGACAATGAATTCGATGGCGTCAGTGAATGATACGACGACGCCGACAATATTAGCCTCGTCTGTGCTGCCTCAAggccagcagcaacaacatcagcagcagcaacaacaacaacaacagcttcagcagcaacaacaacaacagcagcagcttcagcagcaacaacaacaacaacagcttcaACGCCAGCAGCAAATGCTTACCACTTCGAATGCCAACAACATATTGAGTGTAAATGTTGATGCTGGTATCAAGAAATCTGTCAGCTCAACTGGCACAACGACAACGGTACAAGCACAACAAGCTGGCAACATAACGTCAACATCACCGCTTGCCGGGGCTGTGCCGCAAGTGCAATCAGTGCAATCGTTGCATACGCTGCAAACTGTGCAAGTCAAAAAGGACCCGGATGCGCAGCAAcatattcaacaacaacagcagcaacaggcaGGGCAGCAGACAATGACAGTGACAACAAATGCAAGTGGCAAtgtgcaacagcagcaagtgGTGCAagttcaacagcaacaactgcaacatcaTCAGATTATCGATCAATCGGGTAatataacaacagcaacaacaagcgcCCAAGCGGctgcacagcagcagcaacaacaacaacaacaacagcagcagcagcaggcaggtcaacaacaacaattggtCACTCAAACGGAAAACACCGATGGCACAACTTCTCTATCGATTGCACAGGTGCAAACATTGCAGGGCCATCAGATATTGGGCAATATTAATCAGGTGAATATGACtgattttcaacaacaacaacaacaacaacaacaaccacaacagctaccgcaacaacagcaacaacaaccgccACAGacgcaacaaccacaacaacagacacaacaaacacaaccacaacaacaaccacagcaacagcaaacacaaacgactCTATGA
Protein Sequence
MSLPMNSLYSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGLAPQTVTKDDYTTHSIQLQHMIPQHHHDQDQLIATIATAPQQTVHAQVVEDIHQAGQILQATTQTNAAGQQQTIVTTDGSKDVIQQFLPARKRKPRVKKMSPSAPKISKIDGMDTIMGTPTSSHSGQVQVENGDGQLITSTPHIKSEVGKVETIVTMDPNSMIPVTSAQAGDLQSGGSVAGTSSGSGATGTPKAKRTKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGVKKEKKSKSPTDNDSSMNASDFNTTAESTMNSMASVNDTTTPTILASSVLPQGQQQQHQQQQQQQQQLQQQQQQQQQLQQQQQQQQLQRQQQMLTTSNANNILSVNVDAGIKKSVSSTGTTTTVQAQQAGNITSTSPLAGAVPQVQSVQSLHTLQTVQVKKDPDAQQHIQQQQQQQAGQQTMTVTTNASGNVQQQQVVQVQQQQLQHHQIIDQSGNITTATTSAQAAAQQQQQQQQQQQQQQAGQQQQLVTQTENTDGTTSLSIAQVQTLQGHQILGNINQVNMTDFQQQQQQQQQPQQLPQQQQQQPPQTQQPQQQTQQTQPQQQPQQQQTQTTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00251432;
90% Identity
iTF_00251432;
80% Identity
iTF_00251432;