Cind017949.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cacoxenus indagator
Gene Symbol
sip1
Assembly
GCA_035041755.1
Location
JAWNKX010000986.1:1750901-1753818[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.9e-91 2e-87 293.5 10.8 3 275 447 718 445 718 0.97
2 2 0.24 2.5e+03 -2.0 0.0 242 262 730 750 723 766 0.66

Sequence Information

Coding Sequence
atGTCGGATGACGAGTACGAACGTTTTGAGATCACTGACTACGATTTGGCGAATGAGTTCAACATAAATCGGCCGCGCCGCCGGCACACGAAGCATCAGCAAATTTATGGTATTTGGGCCGATGACAGCGACAATGAGAGTGGCGATGAAGCCGAGAGTGGACGTCGTAGACGACGCGGCCTTGGCGGCGGCAGCAAACCAAAGGATTACACGGCACCAGTGAACTTTGTAGCTGGCGGTATACAACAGTCCGGTAAGAAGAACAAAGatcagaagaagaaggaaaacGCGGGCACAGACAGTGCCAGTGCTACAGAAGATGATAACGAGGAGGACATGGACGCACGGCCAACGTTTGGACGCAAAAAAGCCGAGCTGATGGATGTAGATGAGGACAGCAGCAATGAGGACTCCGATGCAAGTGTTGAAAACAGCGAAGTGAAGGTGGCCAAGCAACAAAGCGTCGGTGTTACACGTGGTATtagcagcaacaccagcagGAGCAGTACTTTCACCCATCGTTCGCACCTCGCCAGCGATCGCAATGTTGGCGCCTGGGAGCAGCATACGCGTGGCATAGGTGCTAAGTTACTGCTGCAGATGGGCTACGAACCAGGCAAAGGTTTGGGCAAAGATTTGCAGGGTATTTCGCAACCTGTGCAAGCGCATGTGCGCAAAGGGCGTGGTGCGATTGGGGCTTACGGACCGGAAACTGCTGCCTCTGTAGGTGATAGCAAACTGGCAAAGGTAAAACCGGGCGATGACGTACGCGATGCTAAGGAGCTCAAGGAGCAGTTGAACAAGTGGCGCAAGGGAGATGACTCTCGTGACACAAAGCAGGGTAAGAGGTACTACTACAGAACGGTCGAGGAGGTGCTCGAGAAAGGCCAGAAATCGAACTGTTTGCTGGGCGAGAAATTGAGCAAGAAGCTGGGGAATGTGCCGGTCATCGATATGACGGGGCCAGAGCGTCGCGTCTTGAGCGGCTACCATGCGATCGCCCAAAGCAAAATCGCCGACGATGAGGAATTCTATGATGCCAACACCACAACACCCACTGGAGCAGATGTTGCCGATAAGAAGGCAGCGGGGTTGAATGTTTTTGCAATGCCCGAGCTAATGCACAACCTACAACTCATAGTAAACATGTGCGAGCAGGACATCATAGCTATAGACAAGACAGAGCGCGAAACAATCGATCGCCAGGCAGCGCTCGAGCACGAATATAAGAATCTCGAGGAGGTTGTGCGTTTGGAGCGCGCGCATTTGAGCACACTCGAAGAGGCTATTGACCGAGTGGAAGAACTTTGCGAGGGCGGACCAAGTTTAACACTTGCGCATGCCGAGAAACTCTTCCACGAGCTGAAGTTTAACTATGCTTCGGAGTACAAAGAATTTGGTTTGGGTGACTTGACTGCGGGAGTCATAGCGCCTTTGGTAAAGGAGGCTCTCGTTGGTTGGCAGCCACTCACGCAACCCACAAATCACATTGCTCTGGTTAAGAAGTGGCGCAGTTTGCTGGAGTCGCAACAGGACGACGAAGCACCCATAGCCGATGACAAACGCAATGTATTTGATCCTTACTCATCGCTCGTTTGGGCTGGCGTTATACCGAGTTTCCGTGCTTGTGCCGACAAATGGAATCCCAAGCAACATCAGCATATGGCTGCACTACTCGATGCATGGGCACCGCTCTTTCCCACTTGGGTATTGGACTCTGTACTGGAGCAGTTGATATTGCCACGTTTGAGCGTCGGTGTGCGTGATTGGGATCCACTGACGGACACTGTACCTATACACATTTGGATACTACCATGGAATGCCATACTCGGTGAGAAGATGGAGGAGTGCATCTATCCGACAATACGAGAGAAGTTAGGTGTGGCTATGCAAGCGTGGATGCCACAGGATCGTTCCGCACGCGCAATGCTTACGCCTTGGAAGGGTGCGTTCAGCGATGCCGAAATGCAGTATTTCCTGTTGAGGCACATCATACCAAAGTTGCAGTTGGTGCTCACGGAATTAGTCATTAATCCGCTGCATCAGGATTTGGAACTCTTCAATCAAGTGTGGGAGTGGCATGTGCTCATACCGCCCATGTTAATGGCTGAGATGCTGGACAAGTACTTCTTCCCGCGTTGGATGCAAGTGCTGGTACTTTGGCTCAATCAGACGCCCGACTATACAGAGATCTCACGTTGGTACACCGGCTGGAAGGGCATGTTCAGCGAAGAGGTGCTACGCGAGCCAAATGTCAAGGAACATTTACGTCGTGCGCTCGAAATGATGCATCGTGCCGCGGATGCGGTACCATCGACGACACCACTCGCCGCACCTGTGCCTCCGCCACCTCAACCGCCAGCACCATTGATAATGGATATGTCCCATCTGGTTGCCGCAACGCCTGCACAGCTTGAATTCAAAGAGTTAGTCTCACAGAAATGCGCCGAAATTGGCGTGCTCTTTGCACCGCTCCCCGGCCGCCGGGAGGTCGGTAAACAGATCTACCGCGTTGGCAAGCTGTACTGCTACATTGATCGCAACGTTTGTATGCTCAGCGATGGCAGCTTCAAGAACTGGCAACCCGCCTCTCTTGGCCAACTATTGGAACACGCCCAAACTGGTCTTATTAACTAA
Protein Sequence
MSDDEYERFEITDYDLANEFNINRPRRRHTKHQQIYGIWADDSDNESGDEAESGRRRRRGLGGGSKPKDYTAPVNFVAGGIQQSGKKNKDQKKKENAGTDSASATEDDNEEDMDARPTFGRKKAELMDVDEDSSNEDSDASVENSEVKVAKQQSVGVTRGISSNTSRSSTFTHRSHLASDRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASVGDSKLAKVKPGDDVRDAKELKEQLNKWRKGDDSRDTKQGKRYYYRTVEEVLEKGQKSNCLLGEKLSKKLGNVPVIDMTGPERRVLSGYHAIAQSKIADDEEFYDANTTTPTGADVADKKAAGLNVFAMPELMHNLQLIVNMCEQDIIAIDKTERETIDRQAALEHEYKNLEEVVRLERAHLSTLEEAIDRVEELCEGGPSLTLAHAEKLFHELKFNYASEYKEFGLGDLTAGVIAPLVKEALVGWQPLTQPTNHIALVKKWRSLLESQQDDEAPIADDKRNVFDPYSSLVWAGVIPSFRACADKWNPKQHQHMAALLDAWAPLFPTWVLDSVLEQLILPRLSVGVRDWDPLTDTVPIHIWILPWNAILGEKMEECIYPTIREKLGVAMQAWMPQDRSARAMLTPWKGAFSDAEMQYFLLRHIIPKLQLVLTELVINPLHQDLELFNQVWEWHVLIPPMLMAEMLDKYFFPRWMQVLVLWLNQTPDYTEISRWYTGWKGMFSEEVLREPNVKEHLRRALEMMHRAADAVPSTTPLAAPVPPPPQPPAPLIMDMSHLVAATPAQLEFKELVSQKCAEIGVLFAPLPGRREVGKQIYRVGKLYCYIDRNVCMLSDGSFKNWQPASLGQLLEHAQTGLIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01195986;
90% Identity
-
80% Identity
-