Cpus044410.1
Basic Information
- Insect
- Cabera pusaria
- Gene Symbol
- -
- Assembly
- GCA_954871355.1
- Location
- OX940915.1:5008004-5009134[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.007 1.7e+02 3.8 0.1 23 47 51 75 42 81 0.80 2 7 0.00033 8.2 8.1 0.4 6 44 91 128 87 138 0.72 3 7 0.013 3.3e+02 2.9 0.0 18 44 130 156 126 164 0.82 4 7 0.048 1.2e+03 1.1 0.0 22 43 163 184 159 189 0.86 5 7 0.0052 1.3e+02 4.2 0.1 21 46 190 215 185 220 0.88 6 7 0.00037 9.3 7.9 0.3 20 48 245 273 238 276 0.86 7 7 6.6e-06 0.16 13.5 0.1 21 49 275 303 270 306 0.91
Sequence Information
- Coding Sequence
- ATGTGCGACTACACAAGTAATCGTCAAAACCTTCTCGTTGCTCATCAACTAATACATTCACAGGATAAGCCGTTTTCATGTGATTCTTGTGACTACAAAGCTAAAAGATTGAGCAACTTGATAGTCCACAAAAGAACTCATTCAGGTGTTAAACCATATGAGTGCCAGATATGTATGGCTTCATTTACTACGCATGGTAGTTTAAGAGATCATACGAGGATACACACTGGGGAAAAGCCTTAtaaatgtgatatgtgtgattaTGCAACAGCGAAACACAGCGGATTGACGGAACACAAGAGACGTCACACGGGTGAGAAGCCCTACAGCTGTAACCTATGTGATTACTCTAGCGCCCGACGGAAAGACTTGAATAACCATGTAAGACGTCATACTGGTGAAAAACCCTTTTCATGCAAGTTATGCGATTACACGACAGCCTGGCAAAAGAACATAAAACATCATATTATGAAACTTCACGAGAATGAAAAGAACCATAAATGTCGATACTGCGACGCAAAGTTTGCTTCGAGCAGTAATTTGAAAACGCATGAACGTGTTCATACTGGCGAAGCACCGTACGCATGTAATTTCTGTAGCTATAGAGGCAAGCAGTTGAGCAATTTGAAAGCTCACTTGCTGTTACACTCGGGCAACAAACTGTTTCTTTGCAACTTGTGTGACTACAGGGCTGCTACGTTAACTCTTTTAAATAGTCACAGAAAGTCGCACACAAAAGAGAAACCACATACGTGCATAATGTGCGATAGATCGTTTTCTCGGGCAAGATACTTGAAGACTCATATTAAAAACCAACACACAGGCGATCAGCCCTACACATGCACAATGTGCGACTTTGTTACGgcagaaaaaaacattttaaacagaCACGTCAAACTCAAGCATATTCCAGTTGATACTCCATCGATTTCCAAAATCTGGATTGATATTGAAAGCAGTAATATTAAACAAGAAATGCCAGATGGAAACAGTCCGGAACACGAATTTGAAGAAAGCCGTGAGGAACAGGAAAACAAAATGGATGACTTAACTGTCTGTGagaataatgaaattaaaactgAAATCAAACAGGAATATATTGAAATCAAACAGGAATATATCAGTTGTTAA
- Protein Sequence
- MCDYTSNRQNLLVAHQLIHSQDKPFSCDSCDYKAKRLSNLIVHKRTHSGVKPYECQICMASFTTHGSLRDHTRIHTGEKPYKCDMCDYATAKHSGLTEHKRRHTGEKPYSCNLCDYSSARRKDLNNHVRRHTGEKPFSCKLCDYTTAWQKNIKHHIMKLHENEKNHKCRYCDAKFASSSNLKTHERVHTGEAPYACNFCSYRGKQLSNLKAHLLLHSGNKLFLCNLCDYRAATLTLLNSHRKSHTKEKPHTCIMCDRSFSRARYLKTHIKNQHTGDQPYTCTMCDFVTAEKNILNRHVKLKHIPVDTPSISKIWIDIESSNIKQEMPDGNSPEHEFEESREEQENKMDDLTVCENNEIKTEIKQEYIEIKQEYISC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250740;
- 90% Identity
- iTF_00250740;
- 80% Identity
- iTF_00250740;