Bhed010550.1
Basic Information
- Insect
- Byasa hedistus
- Gene Symbol
- -
- Assembly
- GCA_029286795.1
- Location
- JAGSMW010000014.1:9136811-9145852[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.00012 0.013 16.7 0.9 1 23 202 224 202 224 0.98 2 26 0.0014 0.15 13.3 0.7 2 22 257 277 256 277 0.93 3 26 9.1e-06 0.00096 20.2 0.2 3 23 309 330 308 330 0.97 4 26 0.00016 0.017 16.3 0.9 1 23 382 405 382 405 0.97 5 26 0.0045 0.48 11.8 0.2 1 23 421 443 421 443 0.95 6 26 0.00027 0.028 15.6 1.4 2 23 481 502 480 502 0.95 7 26 0.0017 0.18 13.1 1.6 2 23 544 566 544 566 0.97 8 26 6.5e-05 0.0069 17.6 1.0 1 23 616 639 616 639 0.97 9 26 0.0085 0.9 10.9 0.2 1 23 696 718 696 718 0.97 10 26 0.013 1.4 10.3 6.1 2 23 730 751 729 751 0.96 11 26 0.078 8.2 7.9 2.3 2 23 763 784 762 784 0.96 12 26 0.0057 0.61 11.4 1.1 1 23 794 816 794 816 0.98 13 26 0.0045 0.48 11.8 8.5 1 23 844 866 844 866 0.96 14 26 0.053 5.7 8.4 2.2 1 23 877 899 877 899 0.95 15 26 6.3e-06 0.00067 20.8 0.3 1 23 907 929 907 929 0.99 16 26 0.0026 0.28 12.5 0.1 2 23 949 971 948 971 0.97 17 26 7 7.4e+02 1.7 2.2 1 23 989 1011 989 1011 0.87 18 26 0.071 7.5 8.0 4.6 1 23 1018 1040 1018 1040 0.98 19 26 0.18 19 6.7 4.0 2 23 1051 1073 1050 1073 0.95 20 26 0.0012 0.13 13.5 0.2 2 23 1096 1117 1095 1117 0.95 21 26 0.0021 0.22 12.8 0.5 1 23 1197 1219 1197 1219 0.96 22 26 0.16 17 6.9 4.8 3 23 1227 1247 1225 1247 0.94 23 26 0.0077 0.82 11.0 2.0 2 23 1258 1280 1257 1280 0.95 24 26 0.22 23 6.4 3.3 2 23 1297 1315 1297 1315 0.93 25 26 0.41 43 5.6 0.9 2 23 1388 1409 1387 1409 0.93 26 26 0.0003 0.032 15.5 0.3 2 23 1420 1442 1419 1442 0.97
Sequence Information
- Coding Sequence
- ATGGCTCTCAAACTCGGAAAATGTAGGCTCTGCCTCAAACTCGGCGATTTCTACTCCATCTTTACGATGGATAACAATCTGCAGCTCGCGGAGATGGTAATGGAATGCACACGAGTGAAGGTATATGATGGTGATGGTCTACCTGATAAAATTTGTTCTGAATGCGTTCAGAAGCTAAGCAGTGCACATATCTTTAAACAGCAGTGTGAGAGATCTGATCAAGAGCTGAGACGCAACTATGTACCACCTCCAGGTTTCAGCAGCATTCCATCACCACCGAACAGACAAAGTAGCGACTCTGCATTCTCAAACCACACCGACATATCCAGCAGCAACAAACTCGTATCACCCAAAGAGAGTAAAACCTCACCAGGTAGCCGGAGGCGGAAACGCAGTGTAGAGAGCAATGATAACGCTTCCACAACCAGCCAATCGCACAACTTCAGACCCTCTTCATCGAAACGGGTCGAAGAACTGCGATCGTCCGAGAAAAGACCAAGGGCATCCGTCAACACACCTTCAATGGACTCCGACTACGACGATAATAGCATTTCACAATTTTCCGGCGAAACTGACTCCGATGAACCGATAGCGAAGAGCGGATTTAAATGCAAAGTTTGCGACAAGGAGTTCGCATCCAAGCAGAGCGTGTATGCGCACACAAAAGTTCATAGCAGAAAGTCGTTAAAGCAAAACGCTTTGGTTAATATATCGCAGCCGGCCAGCGTCGCTCATTTGCAGGACGCCACGGACGTCGAAGATAAGCTAACGTGCGACAAATGCGAGAGGACGTTCaagttgaaaataatgttgaaacgGCACCAGGAGACGTGTGGCAAGGCGCCGCCGAAATCGCCGATGAAAGAGTTGCTAGTGTCTTTGGAGCCGATCGACGCGGAGCCAAGAAACGGAAACAAGGTTGACTGCGACATATGCACAGCGAAGTTTAAAACTGCCGAGAACTTGGAGAAGCACATGCGTGTGGTGCACGCGGCTGTCCACAAACGAGACCAGCGCGAAAAAAACTTGGCCAATGGGAAGATCGCCTTCCCTTGTTACTACAAATGTGGACAGTTTCACGACGACTACTACATGTACACCAAACACTTTGACGCCTGTCCCAATAAGAACGACTCGATCGTATTCACTTGTCCAATGTGTCAGAAGGTAGTAACGAAAAAGAGTTCCTATTTCatccatataaaaaatatccattTCAATTGTCCGAGCGGTAACAGCGCAGGCACTTCTAAAGAATCGTTTGATTGTCGAATATGCAATAAGAAATTGGCGACCCAGAATCAGCTGGTTACTCACCTCGCTGCGCACATGTCCAACATAGACGACGAGGACATCCACGACCGGGGCTCtggTTTAGGTGAGATTGAAGAGGAGAATGAGCCGATGTACAGCAGCTCACACGTTCCTAGCGGGCCGCTGAAATGTAGCATGTGCGATAAACGGTTTACGTATAAGAAGGCTCTAGTCACCCACGAGGATAAACACTTCTCCGGCGAAATACAGATAAAGACGGAGCCGCCTGATACAAACGAGTCCGGTAATAGTTTGCTGAGCGAGTCCCACCATCAGTCCGAGTCCGAATCTAGTCAGGAAGAAGGTGACGACAACACTTGCGACATTTGTGAGAAGCAGTTCTCTTACAGACGCGTACTGATCCAACACAAGCGCACCAAACACAACATGAGCTCGGGGACGAAGCGTGCGAAAATCAACCTCAAGGACTGCTCCGTCCGCTGTCTGATATGCGACATTGAAATGAAGGTCAGCGCTATAAACGAACATAATCAGAAGCACACGTCGGTGAACATGAAACCGAGGAACCTGTACACGTGCGCGGAGTGCGATGAGCAGTTTAAAAGCTGCAGCTCACTCGCCACTCATATCAAGTTGGTGCACCGGCTGAAGCAACCGCACACGCCTAAGCTGCAGGGTGCCGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCGATGGCCTTTGGCCAGATCCACAACGACTTTGAAACGGTTCCGTCGACACATGAGGACGAGGGTCCGTTGGTTAATCTCAGCGGGTTTAATTGCCCGATATGCAGCAAGAAGATGCCGACGTTGATATCGCTGAAGAGGCACGTGAACTGGCACGCGAATGTCGGTAATAGTTTGGAGAAGAAGCTAGAATGCTTTGTCTGCAAGGAGACGTTCAGGTTCCAGTGCCACTACAAACTGCACATGCGCGAACACTACAACGACCCGAACATAGACCCAGCGCTGCTCACGTGCACTATATGCAACCGGAAGAGCAAACACTTGCGCGCGGCCAAGGCGCACATGAACTTCCACAAGCAAACGCGCTTCAAGAACAAAGACTACCAGTGTTCCATTTGCAAGAGGGTCTTCCAGTTCAGGAAAGTTTACCTCTCGCACATGGCGATACATTACAAGCGCGGCGAGAGCATCAACTCGATCGTCGGCGTCGATTTACCCACCACGGCGGACAAGACCTTGTTCGACGGCACGCACACCTGCCACCACTGCGGCAAGGTGTGCGATTCCGAGAACTCACTGAAGCATCACATAATATGGCACAAGTCGAAGACGTCGCTGTTCGGCGAACGATACGAATGCAACCTTTGCGGAATTCAATTCACTAATAAGAAAAGGCACGAGCTTCACGTCAGAAGTCACTACGAAGATGATAACGGCCCGTACAAGTGCCCGATATGTGGCAAGGGTTTCATTGATGAGGGTTATCGTAAAAGACACGTCAGAAGTCATAATTTTGACCATCAATCGCATAAAACGAGGATAGAGAATCTTCGTAAAGATAAAGTGAAATGTCCAATTTGCGCCCGTTACTACCCAGACTTGGTGAAGCTGATACGCCATTTGCGGCGAACGCACCCCGAGAGCAAAATGATCAAGTCTGACCCGGATGCTCCCCCCCAGAACTACTTCTCGTGCAAACTGTGTGCTAAAGTCTTCCTAGACGAGCGAAGGTTACACCATCACGAGGAAGCTCACTTGAGAAAGCCGGAGTTCTTCAAATGCAAGTTCTGCGGCAAGAAGACCATCTCCTTGAAAAACCATAGAATTCACATTAAATCTCACTTGAGCCAAAAGTACACAGAAGAGCCGCTGAAGTGTGTGCACTGTGAGGAAACATTCATGAAAGGCTACGACCTGCATCACCACTTGCGCGACGTTCACAACATCAACGAAACTTGGATAGCGGAGCGCACCGAGAAGAAACTTATCGAACCATTGAAAGATTTGCAATGCTCCATTTGCCTGAAGGTTTTGGCTAACAAAGGGAACTTTGAGCGGCACATTGATTACCACAACTCGCTGAGGTGTAATTACTGCTTCGATTACTTCAGCTCGCTCAGGTTTCTGGAAGGCCACCTCGCCTTCAGCtgtgaaaagaaaaagttgATCGGCGATACGGAGGTTTACTCAAAGAAAGTGAAGTGCCATCTTTGCTACAAACCTTTCCATTTGCAAGTGAAATTGGACTGCCACTTGCGAATCCAACACGGCATCAGAGTTTGTAAAGAGGAATCCGAAACCAAGAAGGATTTCGTCTGCGACTACTGCTTCAAAGTATTCGAGAACGAGTACGCTTTGGGTAACCACAAGATTTACCATCGCACGGTCGGATTCTACGGTTGCTTGTATTGCAACCGGAAGTTCAGTACTACGACGCTTTACAACAAACACAAGACTCATCATATGTCGCAACTCAATGTCGAAAGCCCGACGAAGTGCGAGCACTGCGACGAGACATTCGTCGCGTTCAGAGAGATGATCCACCACATGAGGGATGTGCACGGCGATGATAAGGAATGGATTATAATGCCCAAAGAATCAATTGAAGAGAAGTGCCATATTTGCAACAGAGTCTTCTTCAACCTTCAAAAGCATTTGGCGTACCACGAAGAGAACAGATGCAAAAAGTGTTTAGAGTATTTCTTCTCGCAAATCGACTACGACAACCATCTGTGCGCCATTGAGAGCGAGGAGGAAGCGGACGAGAGCAACGATGCCGACGTGCGGCCGACGTACACCGAGTGTGACTTCTGCTTCAAATCAACGACCAAGAAGGCCTCGAAGCGGCTGCACGACCACATACACAGGATGTCCGGCGCGATCTCGTGCCGCTTCTGTTCCCTCAAATTCAAGACCATGGACGCGTTCAACATCCACGCCTTCTCCCACCGCAGCAGGAAGTACGACAAGAAACCGATTAAGTGCCGACAGTGCGGCGAGAAGTTCGTCCGTTACGGGCCGTTCATAAAGCACATGAATACCGTTCACAAGTCTAAACAGAAGATGCACTACCGCGCCCCGGTGAAGCCGGAGCCCTGCGCCGTCTGCGGAAATTCCTACCCGAACCTCCATAACCACTACCGAGCGCACCTGCAGAACCAGTGCCTGTCGTGCCGGAAATACTTCACGTCGTGTAAACTCTTTTCGTTGCACGAATGTGATAAAGAGGACTCGGAACCATCCAAAGTGCTCACGAGTGACGTCGACCTGGTGGCCCTCATCAAAGCCTACACTCCAAAAGACGAGAAGGACGATGAGAAATACTACGGGCACACCGATACTGAAGAGGAGGATCTCGCGGAGACAACGGATGATCGCGAGCCGGCGTATATGATACAAGATGAGACTAGTCAGTACTCTACGGACGTTAACATGCACATGATGGTTCACACTCCGATCATATCCGATGTGCTCTCACTCTACCAGAAGAATGAAGAGAATGACAACGCGATGTCCAACGATGTTGTCAACTTGGTCGATGATGACTGCTTGGATGGTGAAAGGGTAGTCTCTGTTATAACAATTGATGATTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTMDNNLQLAEMVMECTRVKVYDGDGLPDKICSECVQKLSSAHIFKQQCERSDQELRRNYVPPPGFSSIPSPPNRQSSDSAFSNHTDISSSNKLVSPKESKTSPGSRRRKRSVESNDNASTTSQSHNFRPSSSKRVEELRSSEKRPRASVNTPSMDSDYDDNSISQFSGETDSDEPIAKSGFKCKVCDKEFASKQSVYAHTKVHSRKSLKQNALVNISQPASVAHLQDATDVEDKLTCDKCERTFKLKIMLKRHQETCGKAPPKSPMKELLVSLEPIDAEPRNGNKVDCDICTAKFKTAENLEKHMRVVHAAVHKRDQREKNLANGKIAFPCYYKCGQFHDDYYMYTKHFDACPNKNDSIVFTCPMCQKVVTKKSSYFIHIKNIHFNCPSGNSAGTSKESFDCRICNKKLATQNQLVTHLAAHMSNIDDEDIHDRGSGLGEIEEENEPMYSSSHVPSGPLKCSMCDKRFTYKKALVTHEDKHFSGEIQIKTEPPDTNESGNSLLSESHHQSESESSQEEGDDNTCDICEKQFSYRRVLIQHKRTKHNMSSGTKRAKINLKDCSVRCLICDIEMKVSAINEHNQKHTSVNMKPRNLYTCAECDEQFKSCSSLATHIKLVHRLKQPHTPKLQGADLADFCEVVVTKAEPMAFGQIHNDFETVPSTHEDEGPLVNLSGFNCPICSKKMPTLISLKRHVNWHANVGNSLEKKLECFVCKETFRFQCHYKLHMREHYNDPNIDPALLTCTICNRKSKHLRAAKAHMNFHKQTRFKNKDYQCSICKRVFQFRKVYLSHMAIHYKRGESINSIVGVDLPTTADKTLFDGTHTCHHCGKVCDSENSLKHHIIWHKSKTSLFGERYECNLCGIQFTNKKRHELHVRSHYEDDNGPYKCPICGKGFIDEGYRKRHVRSHNFDHQSHKTRIENLRKDKVKCPICARYYPDLVKLIRHLRRTHPESKMIKSDPDAPPQNYFSCKLCAKVFLDERRLHHHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKSHLSQKYTEEPLKCVHCEETFMKGYDLHHHLRDVHNINETWIAERTEKKLIEPLKDLQCSICLKVLANKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLIGDTEVYSKKVKCHLCYKPFHLQVKLDCHLRIQHGIRVCKEESETKKDFVCDYCFKVFENEYALGNHKIYHRTVGFYGCLYCNRKFSTTTLYNKHKTHHMSQLNVESPTKCEHCDETFVAFREMIHHMRDVHGDDKEWIIMPKESIEEKCHICNRVFFNLQKHLAYHEENRCKKCLEYFFSQIDYDNHLCAIESEEEADESNDADVRPTYTECDFCFKSTTKKASKRLHDHIHRMSGAISCRFCSLKFKTMDAFNIHAFSHRSRKYDKKPIKCRQCGEKFVRYGPFIKHMNTVHKSKQKMHYRAPVKPEPCAVCGNSYPNLHNHYRAHLQNQCLSCRKYFTSCKLFSLHECDKEDSEPSKVLTSDVDLVALIKAYTPKDEKDDEKYYGHTDTEEEDLAETTDDREPAYMIQDETSQYSTDVNMHMMVHTPIISDVLSLYQKNEENDNAMSNDVVNLVDDDCLDGERVVSVITIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00180671;
- 80% Identity
- -