Basic Information

Insect: Bruchidius siliquastri
Gene Symbol: -
Assembly: GCA_949316355.1
Location: OX438533.1:31796380-31801227[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.34 25 5.7 1.6 1 23 108 130 108 130 0.91

2 16 0.025 1.9 9.3 2.8 2 23 136 157 136 157 0.97

3 16 0.00022 0.017 15.7 8.3 1 21 163 183 163 185 0.95

4 16 3.2e-05 0.0024 18.4 1.4 1 23 191 213 191 213 0.97

5 16 0.00044 0.033 14.8 2.6 1 23 220 242 220 242 0.97

6 16 0.029 2.2 9.1 3.2 2 23 249 270 248 270 0.96

7 16 0.0047 0.35 11.6 1.2 1 23 275 298 275 298 0.97

8 16 0.00034 0.025 15.2 2.1 3 23 303 323 301 323 0.97

9 16 0.00026 0.019 15.6 1.0 2 23 330 352 330 352 0.95

10 16 9.9e-07 7.4e-05 23.1 1.0 2 23 360 381 360 381 0.98

11 16 6.1e-07 4.6e-05 23.8 0.5 1 23 385 407 385 407 0.97

12 16 1.5e-05 0.0011 19.4 6.0 1 23 413 435 413 435 0.98

13 16 0.0042 0.31 11.7 1.3 1 19 441 459 441 461 0.94

14 16 0.00016 0.012 16.2 2.1 1 23 469 491 469 491 0.99

15 16 3e-05 0.0023 18.5 4.0 1 21 497 517 497 521 0.91

16 16 0.00095 0.071 13.8 0.3 1 23 529 552 529 552 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.34	25	5.7	1.6	1	23	108	130	108	130	0.91
2	16	0.025	1.9	9.3	2.8	2	23	136	157	136	157	0.97
3	16	0.00022	0.017	15.7	8.3	1	21	163	183	163	185	0.95
4	16	3.2e-05	0.0024	18.4	1.4	1	23	191	213	191	213	0.97
5	16	0.00044	0.033	14.8	2.6	1	23	220	242	220	242	0.97
6	16	0.029	2.2	9.1	3.2	2	23	249	270	248	270	0.96
7	16	0.0047	0.35	11.6	1.2	1	23	275	298	275	298	0.97
8	16	0.00034	0.025	15.2	2.1	3	23	303	323	301	323	0.97
9	16	0.00026	0.019	15.6	1.0	2	23	330	352	330	352	0.95
10	16	9.9e-07	7.4e-05	23.1	1.0	2	23	360	381	360	381	0.98
11	16	6.1e-07	4.6e-05	23.8	0.5	1	23	385	407	385	407	0.97
12	16	1.5e-05	0.0011	19.4	6.0	1	23	413	435	413	435	0.98
13	16	0.0042	0.31	11.7	1.3	1	19	441	459	441	461	0.94
14	16	0.00016	0.012	16.2	2.1	1	23	469	491	469	491	0.99
15	16	3e-05	0.0023	18.5	4.0	1	21	497	517	497	521	0.91
16	16	0.00095	0.071	13.8	0.3	1	23	529	552	529	552	0.88

Sequence Information

Coding Sequence: ATGGAACGAAATGGTACGGAAAACAATGAGATGGAGATGAAAGAAGAACCTCCCGATTGCCCTGTTTCTCTAGAAATCATAAAACAGGAACCAGATTCAAAAGCGTTCaagaaaatcaaaattgaagACCAGAATGGATATGATGACAAAAGTACAAAAAGTATAGAAAAATTATTGCTAACAACAGAAGAAATTAAGGAAGAAGTAGAAGATAACTATGAATTGTCTCCATCAGACTTGGAAAAAGAGTTTGAGGAATTTAACACACATGATGAAAAGATTAACAGTGGGAAAACAACTTTGGCAAACAATACGTCTGCTTACAAGTGCCAAATGTGTGATGAGATATTCTTAAAATTTCCTGAATATAGGTTACATAAAAAGAATCATTATATAGAAAAACGGAGGTGCAAAATCTGTAACATGGTTTGTCAGAGTGTGAGCAAATTGTCTGATCATCTCAACAAACACCTTGGTTTGAAACCATTCAAGTGTGATGAATGCGATAAATCTTTTATTTCAAAACACCATCTCAAATTGCACAAAAGATGTCACAGTACTGAGAAGATCTTCAAATGTACCAAGTGTGTGAAAGCCTTCAAAAATCGAATGTCTTTGAGAAGCCACCTTGTTGttcattatgaaaaaattaaggaGTTCATTTGCAAGGTTTGCAACAAAGAATGTGCCGATTTATCCTGCCTCCGCGAACACATGGTTTCACATGGTAACGTCGTAGATATCAGATGTGGCCTTTGCAATAAGAAGTTCAAAAACGATCGGAGTCTGGAGTGTCATCTCAGCACACACAAAGAGCTCAAGTTTCCTTGTGATTTTTGCGGCAAGATATACCAGTCCATGTATAGGATAAAGAGGCACATCAAGAGGTCTCACGTCCGGAGTCACTGTGATGTGTGCAATGAGGTGTTTTTCGATCGAGCGGCATTTACGCGGCACAAAAAGACCCACGACGAATCTAAACAGCGAGAATGTCAATTTTGCCAGAGAAAATTCGCCAGGGCGAAAAATTTGAGCGAGCATGTCAGATTGCAGCACAAGAAGGACGAGCAAGTGAGGAAATGCAGCATTTGCGACAAGGAGTTCATCAATCTGTCACTGTTGAAGAATCACCTGAAAACGCATGACAAGTGTTTCAAGTGCCCTGACTGCGACATGGTGTTCTCTTCCAGGTACAATTTGGAAACGCACTCTGTAACCCACACAGGCGCTAGGAATCACAAATGCCACGTTTGCCAAAAGTCGTACTCGACACGAACCAGTTTGAAGAATCACCTGGCCACACACAGCGACGTTCGCTCCTTTCAATGTGACGTTTGCGCTAAAACGTTCAAAACCAACAGAAGGCTGTACGTGCACAAATTCTGTCACGCTACCGAAGAAAAGTACCAGTGCGAGATATGCTTGCAGAAGTTCAAGGTGAAGCAGTACCTGAAGTACCACATGATCAAACACTCAACAGTGAAACCATTCGAATGCGACGTGTGCAAGAAACGTTTCAAGCACAAAAAATCCTTCGAGAAGCACATGTCGCTGGGCAGACACCGGAAAGTGTTGGACACGGACCACGACTGTGATTTCTGCGACGAATCGTTCGCGAATAGAGAAGAACTGATCGAGCATTTTGAGGAGGTGCATCATGAAGAGAACGTCATCAACAACCTCGATGATACGGAGGAAGGTGTTACTGTCAAGATGGAGATCGAAGACGAAGAGGAAGAGGAGGGATCGTGCTAA
Protein Sequence: MERNGTENNEMEMKEEPPDCPVSLEIIKQEPDSKAFKKIKIEDQNGYDDKSTKSIEKLLLTTEEIKEEVEDNYELSPSDLEKEFEEFNTHDEKINSGKTTLANNTSAYKCQMCDEIFLKFPEYRLHKKNHYIEKRRCKICNMVCQSVSKLSDHLNKHLGLKPFKCDECDKSFISKHHLKLHKRCHSTEKIFKCTKCVKAFKNRMSLRSHLVVHYEKIKEFICKVCNKECADLSCLREHMVSHGNVVDIRCGLCNKKFKNDRSLECHLSTHKELKFPCDFCGKIYQSMYRIKRHIKRSHVRSHCDVCNEVFFDRAAFTRHKKTHDESKQRECQFCQRKFARAKNLSEHVRLQHKKDEQVRKCSICDKEFINLSLLKNHLKTHDKCFKCPDCDMVFSSRYNLETHSVTHTGARNHKCHVCQKSYSTRTSLKNHLATHSDVRSFQCDVCAKTFKTNRRLYVHKFCHATEEKYQCEICLQKFKVKQYLKYHMIKHSTVKPFECDVCKKRFKHKKSFEKHMSLGRHRKVLDTDHDCDFCDESFANREELIEHFEEVHHEENVINNLDDTEEGVTVKMEIEDEEEEEGSC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260826;
90% Identity: -
80% Identity: -