Bhec001805.1
Basic Information
- Insect
- Brenthis hecate
- Gene Symbol
- ffmA
- Assembly
- GCA_951806755.1
- Location
- OX638250.1:903736-916249[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.34 27 5.9 0.7 1 23 264 290 264 290 0.92 2 18 0.14 11 7.1 0.2 2 23 318 340 317 340 0.92 3 18 0.26 21 6.3 5.5 2 23 361 382 360 382 0.97 4 18 0.17 14 6.9 0.2 1 23 386 408 386 408 0.97 5 18 0.021 1.7 9.7 0.5 1 23 413 436 413 436 0.89 6 18 0.012 0.94 10.5 0.5 2 23 473 495 472 495 0.97 7 18 0.0044 0.35 11.9 7.3 1 23 501 523 501 523 0.98 8 18 0.02 1.6 9.8 0.7 1 19 529 547 529 552 0.89 9 18 0.026 2.1 9.4 1.0 1 23 928 951 928 951 0.96 10 18 0.39 31 5.7 0.1 2 23 972 994 971 994 0.93 11 18 0.012 0.98 10.5 0.8 2 23 1017 1039 1016 1039 0.94 12 18 1.8e-05 0.0014 19.4 1.0 1 23 1043 1065 1043 1065 0.97 13 18 0.0026 0.21 12.6 1.3 1 23 1070 1093 1070 1093 0.95 14 18 0.022 1.8 9.7 2.0 1 23 1100 1123 1100 1123 0.91 15 18 0.097 7.8 7.6 0.9 1 23 1130 1153 1130 1153 0.96 16 18 0.00058 0.047 14.6 2.1 1 23 1159 1181 1159 1181 0.98 17 18 4e-05 0.0032 18.3 0.8 1 23 1187 1209 1187 1209 0.98 18 18 4e-05 0.0032 18.3 5.3 1 23 1215 1238 1215 1238 0.98
Sequence Information
- Coding Sequence
- atgaattaCGAAAATCATATTACGTTTTCTGAATATTTGTGTAGATGCAAGTGTTGTTTAAATGATAATGACTTGAAAAGCTTGTGGGAAGTTTATGAGTGTGATGATGGCACAGAGGAAATTTATGGACAAATGGTGGTTGATTGTTTCGCTTTACCGtggtaTCCGACAGACGAACCTGAACACATTTGTGAATTTTGTGTTTTAAAGCTTCGTGAAGCTTTGATTTTCAAGAAGAACATCTTGGCTGTAGAAGATGTTTTATTGAATGATGTCAAATTTAAAGAAGAAGCAGAACCCCAAATAGATACTGAAGATGAAAACCCGGTGGTGGTGAAGTACGTTCCAATTGAAGATGAGTACCAGCACGTGGAGTATCTGGAAGTTGAAGAGGCACAGgaagatAAACTACAGATGAGAAAACTGACCGAATTTGACAATACAAGTTCAGGCCCTTCAACTCCGGGGGCCTCAAACGCGAGCGCACAAAGGAAATGGccaaagaagaaaaagaaacacGAACTAACAAAACTATACAAACAGTACACCCAAAATGATTTAAAGGAGGCTATAAAAGCGGTTACAAACGGTGTTATGACATGTACCAGTGCGGCAACAAAGTATGGCATCCCCAAGAAAACTTTGACTGTCAAAGTTAATACATATGTAGACCGTGAACGTGTCGGCCAAACTGAAGATTCCAATGAtaaacattacaaattaatagaAGAAATTAAACTCCTCCTCACTCACACCACAGCGGTGccttttaaaactaaaacgaCTAGATATTACTGTTTCTACTGTTCTACAGACGGGCGAAATTTTGAAGATACTGACGAACTGAGAGAGCATACGAGGGCTAAACACTCACATGAGTGGACAAAAATAGAAATGTACATGAGACCTCAATGGTTGAACGAAGTTATTAAATTGGACGTAGAGGATTTACATTGCAAAATTTGCCTAACAATGTTGCCAGATTGGAACAATCTGTTTGTCCATTTGGGTGTAAATCATGACCTCGAGTTTGATATGGCTTATACTAGAATAATACCATATGCTTTGAGCTCTGATCTCAAATGTTTTCTTTGCAAGCAAAATTTTCACAATTTTGGTCATCTCGACAGCCATATGAACAATCATTACAGCAATTATATATGTTATGAGTGTGGAGATACTTTTTTGTCAGCGAGCCGTTTAGATAAACATTTGAATGTTCATAAAATAGGCAATTACCCATGTGATTACTGTGAAAAAGTGTTTAAATTAGAGAAATATAAAGCGAAGCATGTTAGTTTAGTGCATATACAAGAAAGTACAGTGAAATGTTTGTATTGCTCTGAAAAATTTGTAGGCATTTTCCAAAGGCATATCCATGTGACGGAACACCATAAAGagaaagttaaatatatgaCATGCGAATACTGTGGGAATAGTTATACATGGAAGCCGTATTTTTTAGCGCATATGAGGAGAAAACATGGTGCTGAGAAAAAGTATAAGTGTAAACATTGTGAAAAAtgctttttaatgaaatatgaatTGAAAAATCATATGGTGAGACATACAGGGGAGAAGAATTTCATTTGTGGTCTATGTGGGCTAGGTTTTACAAGGATGGTTGGTTTGAAAAGACATTGTCAGAATGATCATCAAGAAGATTTGACGGaatcATATGCTGTAAAGATGGAGGATGATTCTGATACTGACATCGAAACAGAGTATCTGAACATAGAGTTTTTAGAGGATGATGATATTGGAAAAGAAAAATCAGGTATAGAAATAAATCCCACTAAAGAAATCGATAATGAATTATACCTAAACCCAGCATCCAAATACTTTAGAGAAGATGATTTAGAAAAATGCGTCAAAGAGGTTCAAAATAAAACACTGTCACAAAATAAACCATCCAAATTGCTTAAAATATCAAGGAGGGTTATTCGTATCCCTCTTGAGAaaacgtCGCCTTTAGATGAGAGTATGAAATTTACGGAAAAAGAAAGTATCCAAAGGGATGAGAAAATTAAAGACAGTGATGATAATAAAATGGATTCACCGGAAAGAGATGAATCATTCAATGTTCCAAGGAAAAAAACAAAGAGATATGCGGAGGCGGACGTGCAGAAGTGCGTGGAGGCGGTACAGAGCAAGACCCTATCACAGAGCAAGGCGGCCATCTTGTACAATGTGCCGCGCAAGGCGATACAAAATGCGTTAAAGAAAATGCCGCCTTTGGATGAAAGTATAAGTATTAAGGAAAAAGAAGGTAAACAAAAGGAAGAAGAAACTACAGACAGTGATGATAATACAACGGATTCACCGGAAATAGATGAACCATTCAGTGTTCTAAgtagaaaaacaaagaaatatacgGAAGCAGACGTACAGAAGTGCGTGGAGGCGGTACAGAGCAAGCGCCTGTCACAGTGCAAGGCGTCCATCTTGTACAATGTGCCGCGGAAGGCGATACATAATGCGTTAGTGAGACTTAAATTGGCCTCATCAAGCAACCCAATGGAGTTGATAACTGCCCAAAAGTCCAAAAAATACACGGAAGAGGATTTCAAGAAGTGTTTGGAGGCGGTCAAGAATAAGACCATGTCTCGTGGCCAGGCTTGCACCATTTATAACGTACCGAGGAGTTCCCTCCATGCCGCCATAGAAAaatattttGATGATGCTGAAAGAAAAACAGATGTGCAAAAGGCACAAGATAATGTGgattgtgtaataaaatatacgaatGCAACGCCTTTGAGAGGTTTTCATCGAGCTGGATACGCGTGTGCGTTTTGCCCCTTAAGATGTGAAAAGCCGGCGGATTTGAAGAAACACACTTTAAAAACACATAGCAAACTGCGTGCTAAAGTTAGCACGCATAGAATAGTTAAACTTGACGTGACAGgtttaaagtgtaaaatatgTGACGAAAAAATCGAAACACTCGAAAGTGTTTTGGAACACTTGAGCTCGGTTCACGGGAAGAAAATTTTCACCGGCATCCGTGAGTTTTTTATACCGTTCAAATTTGAAAGTGACGCGCTGGAGTGTGCGGTTTGTTCGGAAACGTTTCACAGTTTCAAGCTCTTAAACGACCACATGAATTGGAATCACTATAAAAATTTCGAGTGCGATGAGTGTGGACGCGGTTTTATAAGTAAACATTCTCTACGAGCGCACAGCCTAAGACATGAGACGGGAGTGTTCAAGTGTAAATTTTGTCCAAAAGTGTTTTCATCTAAAGTGCGAAGCAATGCCCACGAGCGtactgtacatatatacaacaaCTATCTATACACGTGCGGATATTGCTCGGAACGGTTTTCCAATTTATCAAAGAAAAAACAGCACGAAGTATCAAAACATAACGCAACGCCAACTCTATACAACTGCCAGGCGTGTAGCAAATCGTATCTAGATCTGCGTACGTTAAGAAATCACATACGAGCGTTTCACTTAATGCAGCGTCCACACAAGTGTGCCAAGTGTGATTTCAGTGCGTACACGCCTTATGATTTGAAAAAGCATATGATAAAACACACTGGAGATAGAAATTTTACATGTGACATTTGTTCGAAGTCGTACGGCATGAGGACGACACTTCGAGAGCATATGCGGATACATGCGAACGATAGACGGTTCAAGTGTGAACACTGTGGGCAGGCGTTCGTGCAGAAGTGTAGTTGGAAAATGCATATGCGGACTAAGCATGGCGAGCatgtgtag
- Protein Sequence
- MNYENHITFSEYLCRCKCCLNDNDLKSLWEVYECDDGTEEIYGQMVVDCFALPWYPTDEPEHICEFCVLKLREALIFKKNILAVEDVLLNDVKFKEEAEPQIDTEDENPVVVKYVPIEDEYQHVEYLEVEEAQEDKLQMRKLTEFDNTSSGPSTPGASNASAQRKWPKKKKKHELTKLYKQYTQNDLKEAIKAVTNGVMTCTSAATKYGIPKKTLTVKVNTYVDRERVGQTEDSNDKHYKLIEEIKLLLTHTTAVPFKTKTTRYYCFYCSTDGRNFEDTDELREHTRAKHSHEWTKIEMYMRPQWLNEVIKLDVEDLHCKICLTMLPDWNNLFVHLGVNHDLEFDMAYTRIIPYALSSDLKCFLCKQNFHNFGHLDSHMNNHYSNYICYECGDTFLSASRLDKHLNVHKIGNYPCDYCEKVFKLEKYKAKHVSLVHIQESTVKCLYCSEKFVGIFQRHIHVTEHHKEKVKYMTCEYCGNSYTWKPYFLAHMRRKHGAEKKYKCKHCEKCFLMKYELKNHMVRHTGEKNFICGLCGLGFTRMVGLKRHCQNDHQEDLTESYAVKMEDDSDTDIETEYLNIEFLEDDDIGKEKSGIEINPTKEIDNELYLNPASKYFREDDLEKCVKEVQNKTLSQNKPSKLLKISRRVIRIPLEKTSPLDESMKFTEKESIQRDEKIKDSDDNKMDSPERDESFNVPRKKTKRYAEADVQKCVEAVQSKTLSQSKAAILYNVPRKAIQNALKKMPPLDESISIKEKEGKQKEEETTDSDDNTTDSPEIDEPFSVLSRKTKKYTEADVQKCVEAVQSKRLSQCKASILYNVPRKAIHNALVRLKLASSSNPMELITAQKSKKYTEEDFKKCLEAVKNKTMSRGQACTIYNVPRSSLHAAIEKYFDDAERKTDVQKAQDNVDCVIKYTNATPLRGFHRAGYACAFCPLRCEKPADLKKHTLKTHSKLRAKVSTHRIVKLDVTGLKCKICDEKIETLESVLEHLSSVHGKKIFTGIREFFIPFKFESDALECAVCSETFHSFKLLNDHMNWNHYKNFECDECGRGFISKHSLRAHSLRHETGVFKCKFCPKVFSSKVRSNAHERTVHIYNNYLYTCGYCSERFSNLSKKKQHEVSKHNATPTLYNCQACSKSYLDLRTLRNHIRAFHLMQRPHKCAKCDFSAYTPYDLKKHMIKHTGDRNFTCDICSKSYGMRTTLREHMRIHANDRRFKCEHCGQAFVQKCSWKMHMRTKHGEHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00247967;
- 90% Identity
- iTF_00247967;
- 80% Identity
- iTF_00247967;